Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 168 / 1e-49 Major facilitator superfamily protein (.1.2.3) AT3G05165 169 / 7e-49 Major facilitator superfamily protein (.1.2.3.4.5) AT5G27350 167 / 5e-48 SFP1 Major facilitator superfamily protein (.1) AT5G27360 167 / 5e-48 SFP2 Major facilitator superfamily protein (.1) AT3G05160 164 / 2e-47 Major facilitator superfamily protein (.1.2) AT3G05400 156 / 3e-44 Major facilitator superfamily protein (.1.2) AT1G08930 157 / 4e-44 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT2G48020 154 / 3e-43 Major facilitator superfamily protein (.1.2) AT5G18840 153 / 9e-43 Major facilitator superfamily protein (.1) AT3G05155 147 / 1e-41 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035354 [exp] 174 / 1e-50 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 172 / 8e-50 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029960 [exp] 170 / 1e-48 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 170 / 1e-48 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 165 / 8e-47 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10008179 [exp] 153 / 4e-43 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029962 [exp] 154 / 9e-43 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10012780 [exp] 154 / 1e-42 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10033995 [exp] 146 / 9e-41 AT5G18840 411 / 9e-142 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039900 [exp] 184 / 3e-54 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 176 / 2e-51 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.013G027700 [exp] 175 / 4e-51 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 173 / 5e-50 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.010G026500 [exp] 154 / 7e-43 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 154 / 7e-43 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 151 / 6e-42 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 144 / 3e-39 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 133 / 2e-35 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.007G024300 [exp] 129 / 8e-34 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10018956 pacid=23149980 polypeptide=Lus10018956 locus=Lus10018956.g ID=Lus10018956.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGTGGGTTTCTAGAGAAACCTCTGCTTGGGGAGTGTAGCAAACCTGAAGCGACGACGTTGAAAAGTGCCGGAGGGTCATCCACGTCCCCGG TGACACCCGCCGTTATCTTCAGTTCTTTGGTTGCTGTTTGTGGCTCCTTCACTTATGGTTGTGCTCTGCTGGCAAACTGCGGGTTTTCAACAACATTCTT GGTGGGGAACTCTGTTTCTTGGCGCACATTAGCCGCTGTAGGTGTTGCACCTGGTATCCTGCAACTCATGGGATTATTCTTTGTGCCTGAGTCTCCAAGA TGGCTTGTACAAGTTGGAAGAGGGAAAGAGTTTGAGGCTTCCTTGAAATTGCTGAGAGGGGAGGATACTGATATCTACCAAGAAAAACAAGAAATCAAAA ACATGGTGGATGCATTCAAAGAAGACAAAGTAGATGCCAAAGTTGGAGTTGGTCTGATGGTTTTTCAGCAACTTGGAGGCATGTCTGGAGTTGCATTTTA CGCTACTTTTGTTGCCGACAGAGCAGGATTTCTGACTAGCACAGGTACCATCATTATTTCCTTAACACAGGTTCCAGCAGCAGCAGCAGGGCTTTTTTTG ATGGATTATGCTGGAAGAAGACCAATTCTGATGGTGTCTGCAGGTGGAATGTGCTTATGTAGCTGTCTTGTAGGTGTGTCATTTGCATTGCAGGGCCTTA ATCTTTTAAAGAACTTCACTCCAATCATGACTGTCCTTGGCATAACTATATTTCCAATGAGTGAAAGCAGTGGCAGGGAGTCTCATAACATTAGTGAGCT GGTCAGCTTCTTGGGTGGTCAGTTACAGTTTCAACTTCATGCTGAAATGGAGCCCAGCAGGGACATTCTTTATATTTGGTGTGATATGTGGAGCATCTGT AGTGTTCACCTGGAAACTGGTACCAGAGACCAAAGGAAGGACACTTGA
AA sequence Show only first row Show all	>Lus10018956 pacid=23149980 polypeptide=Lus10018956 locus=Lus10018956.g ID=Lus10018956.BGIv1.0 annot-version=v1.0 MEEGGFLEKPLLGECSKPEATTLKSAGGSSTSPVTPAVIFSSLVAVCGSFTYGCALLANCGFSTTFLVGNSVSWRTLAAVGVAPGILQLMGLFFVPESPR WLVQVGRGKEFEASLKLLRGEDTDIYQEKQEIKNMVDAFKEDKVDAKVGVGLMVFQQLGGMSGVAFYATFVADRAGFLTSTGTIIISLTQVPAAAAGLFL MDYAGRRPILMVSAGGMCLCSCLVGVSFALQGLNLLKNFTPIMTVLGITIFPMSESSGRESHNISELVSFLGGQLQFQLHAEMEPSRDILYIWCDMWSIC SVHLETGTRDQRKDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05165			Major facilitator superfamily ...		Lus10018956 [exp]	0	1
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010833 [exp]	5.0	0.7570
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10036465 [exp]	5.9	0.8070
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	9.5	0.7719
					Lus10010597 [exp]	16.6	0.7480
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10034441 [exp]	19.5	0.7154
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	19.8	0.7465
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	20.8	0.7708
AT2G38510			MATE efflux family protein (.1...		Lus10025156 [exp]	20.9	0.7718
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	26.2	0.7179
AT4G04480			unknown protein		Lus10015548 [exp]	32.0	0.6949

Compare expression of checked genes

Lus10018956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.