Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04750 305 / 2e-98 Major facilitator superfamily protein (.1) AT1G54730 303 / 2e-97 Major facilitator superfamily protein (.1.2.3) AT3G05150 300 / 1e-96 Major facilitator superfamily protein (.1) AT2G48020 297 / 2e-95 Major facilitator superfamily protein (.1.2) AT3G05165 287 / 2e-91 Major facilitator superfamily protein (.1.2.3.4.5) AT4G04760 276 / 2e-87 Major facilitator superfamily protein (.1) AT3G05160 268 / 4e-84 Major facilitator superfamily protein (.1.2) AT5G27350 267 / 1e-83 SFP1 Major facilitator superfamily protein (.1) AT5G18840 266 / 2e-83 Major facilitator superfamily protein (.1) AT5G27360 265 / 1e-82 SFP2 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033815 [exp] 703 / 0 AT1G54730 305 / 8e-100 Major facilitator superfamily protein (.1.2.3) Lus10033795 [exp] 683 / 0 AT4G04750 360 / 3e-120 Major facilitator superfamily protein (.1) Lus10000924 [exp] 458 / 4e-158 AT4G04750 371 / 1e-124 Major facilitator superfamily protein (.1) Lus10002258 [exp] 399 / 2e-131 AT1G54730 319 / 2e-101 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 320 / 5e-104 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 299 / 2e-95 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10029960 [exp] 291 / 4e-92 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 288 / 1e-91 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 280 / 2e-88 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027700 [exp] 327 / 1e-106 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 318 / 4e-103 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 313 / 3e-101 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 311 / 1e-100 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 296 / 5e-95 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.002G212900 [exp] 292 / 4e-93 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 290 / 1e-92 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 286 / 8e-91 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 271 / 3e-85 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 254 / 2e-78 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10018957 pacid=23149978 polypeptide=Lus10018957 locus=Lus10018957.g ID=Lus10018957.BGIv1.0 annot-version=v1.0 ATGATCGTTGAAGAAGAAGCTCAAGCTACACAGCCACTCCTCCGTCCTTTTCCTGTTGGCCGCAATTCCCCATTTACTCCAACTCTTGTCTTCAGTATCT TCACCATTGCTTGTGGTTGCTTTACTACTGGATGCATTGGGAGTGTGGGATATTCGTCACCGGTGGAGTATGCAATTGTGGAAGAATTGGGTCTTTCAGT TGAAGAGTACTCTGTGTTTGGATCAACGATGATAGCTGGGGGGCTCTTTGCTGCCGTCACTGGTGGAAAGATTGCGGAACTAATTGGAAGAAAACTTACA GTAGTGGGTGTGGCTGGATTGTACGTTGTTGGATGGCTTACCATTGCATCTGCAAAGGGTGCTTGGCAACTTGACCTTGGGAGACTGGTTCAGGGAATTG GCTCAAACTTGACGCTTTACCTGACACCTCTTTATGTAGCAGAAATATCACCCAAGAATGTCAGGGGAACTGTTGTATCCATGTCTCAGCTGGCAATCAT GGTCGGCATTTCATTCACATTCATAGTAGGTTCCATAATCAACTGGCGTACCGTGGCACTAATCGGAGCGGCTTCAGGTGTACTGCAGTTGTTTCTTACA CTTTTTGTCCCAGAATCTCCTAGGTGGCTGGCTAAAACAGATAAGGGTGACCAGTTTGAAGCTGTGTTGCTGCGGCTGAGAGGAGAAAATCAGGATATTT CTTGGGAAATAGAGGAAATCAAGGGGACAAAATTAAAATTTGTTATTGAGAGACCGAGTTTTCCAGTTGGCTTTGACAGAACAATGAAGAATGTTTGGTT TATGTTGAACATCAGGAGTATACCAAAACAATTCAAAGCATTTCTCAGGATAGCAGCATGTTTAGTCTGTTTCAGAAGCAGTATGCAATTCCATTTACCT GCTCACTTAATTAGCGTGTTTGCTAACTGGTCTTGCTGCATCCAATGGAAGGTTGGAAATGGGTTGTTAGCGCTAGAACAATTTGCAGGGATGAACTCGT ACATGTTCTATACGGGTGCCATTTTCGTTTCAGCAGGTATCTCAAACACCATAGGATTCTTGGCAGTATCAGCTGCTCAGCTTCTTGGGGCTATATTAAC TACAGCATTGCTGGATAGATATGGAAGAAGACCGATTTTACTGGCGTCAGCTTTGGGGACATGTTCTGCTAGTTTGCTCACTGCACTGTCTTACATCCTA AAGGGCTATCAGGGGTTGAGTGAAGCAACTCCTGCACTAGCACTCCTAAGTATACTGATGTTCATGGGGGCTATGTCACTTGGGAATGGAATTTCCTGGA TCACAGTTGCGGAGATATTTCCACAGAACATAAAAGGTGCAGCAGGGAGCATGTGCATTCTGTCCTGCAACATCTCATCTCTGCTAGTTACACTCTCCTT CCAGTCTTTGCTCCAATGGAGCTCTTCAGGGACGTTCTTGATATATGCAGGTGTAAGTGCTGTGGCAATCATATTTGTGGCCAAGTTGGTTCCTGAGACT AACGGAAGAGCCCTGGAAGAAATTCAATCCTCTTTTACCCACAAATGA
AA sequence Show only first row Show all	>Lus10018957 pacid=23149978 polypeptide=Lus10018957 locus=Lus10018957.g ID=Lus10018957.BGIv1.0 annot-version=v1.0 MIVEEEAQATQPLLRPFPVGRNSPFTPTLVFSIFTIACGCFTTGCIGSVGYSSPVEYAIVEELGLSVEEYSVFGSTMIAGGLFAAVTGGKIAELIGRKLT VVGVAGLYVVGWLTIASAKGAWQLDLGRLVQGIGSNLTLYLTPLYVAEISPKNVRGTVVSMSQLAIMVGISFTFIVGSIINWRTVALIGAASGVLQLFLT LFVPESPRWLAKTDKGDQFEAVLLRLRGENQDISWEIEEIKGTKLKFVIERPSFPVGFDRTMKNVWFMLNIRSIPKQFKAFLRIAACLVCFRSSMQFHLP AHLISVFANWSCCIQWKVGNGLLALEQFAGMNSYMFYTGAIFVSAGISNTIGFLAVSAAQLLGAILTTALLDRYGRRPILLASALGTCSASLLTALSYIL KGYQGLSEATPALALLSILMFMGAMSLGNGISWITVAEIFPQNIKGAAGSMCILSCNISSLLVTLSFQSLLQWSSSGTFLIYAGVSAVAIIFVAKLVPET NGRALEEIQSSFTHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	0	1
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	1.0	0.9217
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	2.8	0.8724
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	3.2	0.8476
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	3.5	0.8862
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	4.2	0.8731
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	6.9	0.7823
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	8.5	0.8125
AT1G52780			Protein of unknown function (D...		Lus10033064 [exp]	9.6	0.7552
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	10.5	0.7566
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	11.2	0.8183

Compare expression of checked genes

Lus10018957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.