Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05140 502 / 6e-176 RBK2 ROP binding protein kinases 2 (.1) AT5G18910 422 / 2e-143 Protein kinase superfamily protein (.1) AT5G35960 375 / 2e-126 Protein kinase family protein (.1) AT5G65530 342 / 5e-113 Protein kinase superfamily protein (.1) AT5G10520 334 / 7e-110 RBK1 ROP binding protein kinases 1 (.1) AT5G57670 320 / 7e-103 Protein kinase superfamily protein (.2) AT2G18890 304 / 3e-99 Protein kinase superfamily protein (.1.2) AT4G35030 237 / 2e-73 Protein kinase superfamily protein (.1.2.3) AT1G77280 246 / 4e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 239 / 2e-70 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012776 [exp] 419 / 2e-140 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 418 / 4e-140 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10008192 [exp] 374 / 6e-126 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10035949 [exp] 345 / 1e-113 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10012727 [exp] 328 / 9e-106 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10006957 [exp] 316 / 2e-104 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10019990 [exp] 311 / 6e-99 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10025713 [exp] 296 / 1e-95 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10015516 [exp] 246 / 2e-74 AT5G57670 515 / 1e-177 Protein kinase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028100 [exp] 578 / 0 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.014G136300 [exp] 435 / 3e-150 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.010G027301 [exp] 422 / 4e-143 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.007G011700 [exp] 347 / 4e-115 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.006G173700 [exp] 326 / 5e-105 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 325 / 1e-104 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.018G091200 [exp] 313 / 7e-103 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 304 / 2e-99 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.008G197800 [exp] 270 / 5e-85 AT5G18910 348 / 2e-115 Protein kinase superfamily protein (.1) Potri.002G077900 [exp] 255 / 2e-76 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018959 pacid=23149995 polypeptide=Lus10018959 locus=Lus10018959.g ID=Lus10018959.BGIv1.0 annot-version=v1.0 ATGGCTCAAACATATTCTCCTTCTGCTCTTGATAGCCATCAATGGGTGCTTGACGGTTTGCATGATGATAACAACATAACCGTAGTGCAAAAGGATCAAG GAGATGTTGTCTCGAATAAACAAAACAAAAGAACAAGCTCAAAGATGCCATCTTCAGCTTCAGCTCATGCTTCTTTCGAAATGTTGACAACAGACTTGAG AAACTTTGCCATGGAAAAGGAGATACAAGATGTGTCTTCTCCTAGAGGAGTTATAGAAGCCTGCTTGAATGGCTGGGAACCCGATTCGGGCTCTCCTGAA GCTAGCAATGAAGAGTTGTTACAAGTAGCCAAACCAGAACATTCTAATAAAACACATTCTAATTGGACAAAGTTCTTCAAAGTTTGGAAATTACGACCAC TAAAACGTTTAGCTCATCCTACGATGCCTAGAGCTCCAAGGAGGAGCAGGAGTGCAAAGGAAGACCCATTGCTAAGGGACCTGTACAATTTCAAGTCTTC ATTAAAGAACTTTACCTATTCTGAACTCAAAGCGGCAACTGACCATTTCAGTCAAGATAACTTGATTGGGAAAGGAGGTTTTGCTGAAGTTTACAAGGGT CACTTGTCGGATGGAAAATTGATTGCAATTAAGCGCCTGACACGAGGAACGAACGAGGAAAAGACGACAGGATTTCTATCTGAGATTGGGATTTTAGCTC ATGTTGATCATCCCAACACTGCTAGGTTACTTGGTTGTGGCATTGAAGGAGGGATGCATCTTATCTTTGAGTTGTCTCCTTTAGGGAGTTTAAGAACAGT GCTTCATGAATCAGAAGTGAAGCCCGTGTGGAGTAAAAGATACAAAATTGCATTAGGGACGGCTGATGGGTTACTTTATCTGCATGAGACTTGCAGAAAA CGAATCATTCATAGGGACATCAAAGTCGACAATATTCTACTTACAGAAAATTTTGAGCCTCAGATATGTGATTTTGGACTGGCAAAGTGGTTACCAAAGC AGCTGTCACACCATCATGTTTCAAAGTTTGAAGGCACATTTGGCTACTTTGCTCCTGAATACTTCATGCACGGCATAGTTGATGAGAAAACAGATGTTTA TGCTTTTGGAGTCATACTCTTGGAACTCATAACTGGACGACAAGCTGTTGATGATTCACAACATAGCCTAGTGATATGGGCAAAGCCTTTGCTAGATAAC AATGATCTTGAAGAGCTTGTGGACCCTGCTCTTCACAATAACTATGACTCTAAAGAGATGGATCACATGGTTCTTACTGCCTCTTTGTGCATTGAGCATT CCCCTGTCCTGCGTCCTCGAATGAGCCAGGCACGGGATGATTATGCACTGGAATGTGCAAAGCAAGATCAAAAGCGAGCCCTCCAAAGGACATACTCAAA TGAGCTATTGGACGCTCAAGAATACAACTCCACCAAGTATTTGAGCTTAAGGGATATCAATCGACTCAAAGAGATTGCATTTTGTACTTGA
AA sequence Show only first row Show all	>Lus10018959 pacid=23149995 polypeptide=Lus10018959 locus=Lus10018959.g ID=Lus10018959.BGIv1.0 annot-version=v1.0 MAQTYSPSALDSHQWVLDGLHDDNNITVVQKDQGDVVSNKQNKRTSSKMPSSASAHASFEMLTTDLRNFAMEKEIQDVSSPRGVIEACLNGWEPDSGSPE ASNEELLQVAKPEHSNKTHSNWTKFFKVWKLRPLKRLAHPTMPRAPRRSRSAKEDPLLRDLYNFKSSLKNFTYSELKAATDHFSQDNLIGKGGFAEVYKG HLSDGKLIAIKRLTRGTNEEKTTGFLSEIGILAHVDHPNTARLLGCGIEGGMHLIFELSPLGSLRTVLHESEVKPVWSKRYKIALGTADGLLYLHETCRK RIIHRDIKVDNILLTENFEPQICDFGLAKWLPKQLSHHHVSKFEGTFGYFAPEYFMHGIVDEKTDVYAFGVILLELITGRQAVDDSQHSLVIWAKPLLDN NDLEELVDPALHNNYDSKEMDHMVLTASLCIEHSPVLRPRMSQARDDYALECAKQDQKRALQRTYSNELLDAQEYNSTKYLSLRDINRLKEIAFCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Lus10018959 [exp]	0	1
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10019689 [exp]	1.0	0.7173
					Lus10015042 [exp]	9.9	0.5937
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020147 [exp]	10.6	0.6282
					Lus10004507 [exp]	11.2	0.6394
					Lus10002071 [exp]	19.8	0.5839
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	20.6	0.6049
					Lus10013650 [exp]	22.8	0.6136
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10035001 [exp]	23.6	0.5878
					Lus10013649 [exp]	25.5	0.5958
AT2G40410			Staphylococcal nuclease homolo...		Lus10041146 [exp]	29.3	0.5943

Compare expression of checked genes

Lus10018959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.