Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54710 878 / 0 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT1G03380 717 / 0 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT5G54730 288 / 3e-84 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002257 [exp] 1242 / 0 AT1G54710 897 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033817 [exp] 1234 / 0 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10000925 [exp] 1198 / 0 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033818 [exp] 503 / 2e-171 AT1G54710 83 / 2e-17 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10035835 [exp] 462 / 7e-149 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10036618 [exp] 449 / 1e-143 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028200 [exp] 1160 / 0 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.005G040300 [exp] 1130 / 0 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.011G132700 [exp] 503 / 7e-163 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 497 / 5e-161 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12490 [flax] [poplar] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Lus10018960 pacid=23149961 polypeptide=Lus10018960 locus=Lus10018960.g ID=Lus10018960.BGIv1.0 annot-version=v1.0 ATGAAGAATAGCAGCAAAGGAAGCAACATCACTAAGAACAGCAGCAACAATGGCTTCCTTCCGAGCTCTCTGAAATTCATTTCCTCTTGTATCAAAACTG CTTCTTCCGGCGTTCGGTCTGCTAGCGCCTCCGTTGCCGCTTCGATCTCCAGTGAAAATCAAGGCAGCCTCAGGGACCAGGTTCTTTGGGCCTCATTTGA CAAGCTACAGCTTAGTCCATCCTCCGTCAGAAATGTTCTCTTACTTGGGTACTCTAATGGCTTCCAAGTCATTGATGTGGACGATGCCTCTGGTGTTACT GAGCTTGTGTCAAGAAGGGATGATCCAGTTACTTTTCTTCGTATGCAGCCACTCCCAGCTAAGGCTGAGGGCTCTGAAGGATTTAGAGCTGCTCATCCGT TGCTCCTAGTAGTTGCTTGTGATGAATCCAAAAGCTCTGCACTTGTTATCAATGGAAAAGATGGATTGGTCAAGGACGGTATTATTGAGCATCAATCGGG AGCCTTTGCACTCAATCCCACCATAGTTCGTTTTTATTCTCTGAAATCCCACAATTACGTTCACGTTCTAAGATTCCGTTCACCTGTATTCATGGTTAGG TGCAGTCCTCAGATAGTGGCTGTTGGTCTTGCCACACAAATATACTGCTTTGATGCTTGCACTCTAGAGAACAAGTTCAGTGTCCTCACGTATCCTGTGC CGCAATTGGTCAGCCAAGGAGGCATTGGGGCTAACACTGGATATGGGCCGATGGCAGTTGGTCCAAGGTGGTTAGCGTATGCATCTGACAATCCATTGGT ATCCAATACTGGCCGCCTAAGTCCACAAAGTCTTACACCTACCCTAGGTGTCAGTCCATCAACTTCGCCAGGCAATGGTAACTTAGTGGCTCGTTATGCC ATGGAATCTAGCAAGCAGCTTGCTACTGGACTGGTGAGTTTAGGTGACATGGGCTACAAGACATTGTCTAGATACTGTCAAGATTTTATCACCGATGGTT CTGGGTCACCTGTCCCACCCAATTCTGGCTGGAAAGTTGGACGAGCTGCAACTCATTCCCCAGAAGCTGATACTGCTGGAATGGTTGTTGTGAAAGATTT TGTCTCAAGAGCTGTGATTTCACAATTTAGAGCTCATACAAGTCCCATTTCTGCTCTATGCTTTGATCCGAGCGGTACACTATTGGTTACTGCATCAATT CATGGAAACAATATAAATATATTCCGAATCATACCCTCCTCTGTTCATGGTGGATCTGGTGCAAAGAGTTATAATTGGAGCTCTGCTCATGTGCACCTTT ACAAGCTTCATCGGGGAATAACTTCAGCAGTGATACAGGATATATGCTTTAGCAGTTATAGTCAGTGGGTTTCCATAATTTCATCCAGAGGCACCTGCCA TATTTTTGCGCTTTCACCATTTGGTGGTGCGAATGTTCTCCAAATACAAAACTCTGATGTGGACGGTCCCATCCTATTACCAGTTTTATCTCTACCATGG TGGTCCACTCCTTCATTCCAAGTGAACCAGCAGATTTTTTCTGCATCTCCACCTGCCCCTGTTACTCTATCTGTGGTGGCTCGAATAAAGGATAACCACT CCGGCTGGCTTAACACAGTTAGCAATGCTGCATCATCTGCTGCAGGAAAGGCCTCACTACCATCTGGTGCTCTTGCAGCCGTCTTTCATAACTGTGTACC ACGAGATCTGCAACCTTCACATTTGAAGAAAGTTAATGCCATGGAGCACCTGGTGTCATATACCCCTTCTGGACACGTAGTTCAATACAAATTGGTGTCT TCAGTTGGGGCAGAGACCAGTGAAGGTACACCAAGAGTTGGACTAGCATCTTCACTTCAGACTCCAGATGAAGAACTACACGTGAAGACTGAATCTGTTC AGTGGTGGGATGTTTGCAGAAGAGCCGATTGGCCAGAAAGGGAGGAATACATTTCTGGTCTTGCTCACAGCAGCCAAGAAAATGCAGATATGGCCATGCA TACTTCTGAGTTTGAAGATAATGGGACTGGGATTGCGAGGGCATCTGATTTTATGGATACTGTTACACGAAATATGGACTTGGTAAAATCACATGAACAG TCCCACTTATATCTTGCAAATGCTGAAGTACAGATGAGCCCCTGGAGAACACCTCTCTGGCAGAAATCTAAGGTATACTTCTATGCAATGACTGGCATTG AAGCTGATAAGCAGTATGTTGCTGAAGATCATTACATTGGAGAGATTGAAGTAGAGAAGGTTCCAGTTCATGAAGTTGAAATTAGGCGAAAGGATTTATT GCCTGTTTTTGACCATTTTCACAGGGCTGTTGGTTGGAATGATCGGGAACTTCGGAGGGAAAGATCGACTTTTTCTACAGGTTCTTATGGAGTTAATCAG TCGGCTGTTCCTGCAGCTTTACAGCAGCCTAAGACGGTTTCAGCTAGTTCTGGTGCAAACTCGGATTGTGGGTCGTCGGCAAACTTGTATATATCTGCTC AACATGTTCATGGGAAATTTGTAGGAAGGGGTGGGATTTCTGGTTTGGCATCCCCACTTCTGTATCAAAGCCCAACTAACAATAACAGCGGGCTACTTCC GTTTAAGCCGACTCCAATGAGTATTTCTCCTGCTGCAGATAGTAACTCTATGAATAGTGATGTAGCATCTTTAACACATGGCTCCCCCTCTCCTGGTAGA AATATGGGAAACGAAGGGCAGTCATCAAATGGTGTTCTGACCAGTGAATCCTCACATGCAAGTTCCAATCGTTCGGACTTGAGCGCAAACATTATAGATG AGGGGATGGTGAATGAGTCCCCAGATTTTGAGCAGCTTTTCCAGGAAGGCTACTGTAAAGTAGCAACCCTGTCCGAACGTGGTGGTGAAGACAAAATGGC CAGGCCTCGTGAACCAGAACCTGAAGACCCAGATGAAGAGGATGATGATATGCTTGGAGGGGCTAATGGTGCGAATCTTGTTCGTCCCTGTGGCTTGCTG ATGAAGTAG
AA sequence Show only first row Show all	>Lus10018960 pacid=23149961 polypeptide=Lus10018960 locus=Lus10018960.g ID=Lus10018960.BGIv1.0 annot-version=v1.0 MKNSSKGSNITKNSSNNGFLPSSLKFISSCIKTASSGVRSASASVAASISSENQGSLRDQVLWASFDKLQLSPSSVRNVLLLGYSNGFQVIDVDDASGVT ELVSRRDDPVTFLRMQPLPAKAEGSEGFRAAHPLLLVVACDESKSSALVINGKDGLVKDGIIEHQSGAFALNPTIVRFYSLKSHNYVHVLRFRSPVFMVR CSPQIVAVGLATQIYCFDACTLENKFSVLTYPVPQLVSQGGIGANTGYGPMAVGPRWLAYASDNPLVSNTGRLSPQSLTPTLGVSPSTSPGNGNLVARYA MESSKQLATGLVSLGDMGYKTLSRYCQDFITDGSGSPVPPNSGWKVGRAATHSPEADTAGMVVVKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASI HGNNINIFRIIPSSVHGGSGAKSYNWSSAHVHLYKLHRGITSAVIQDICFSSYSQWVSIISSRGTCHIFALSPFGGANVLQIQNSDVDGPILLPVLSLPW WSTPSFQVNQQIFSASPPAPVTLSVVARIKDNHSGWLNTVSNAASSAAGKASLPSGALAAVFHNCVPRDLQPSHLKKVNAMEHLVSYTPSGHVVQYKLVS SVGAETSEGTPRVGLASSLQTPDEELHVKTESVQWWDVCRRADWPEREEYISGLAHSSQENADMAMHTSEFEDNGTGIARASDFMDTVTRNMDLVKSHEQ SHLYLANAEVQMSPWRTPLWQKSKVYFYAMTGIEADKQYVAEDHYIGEIEVEKVPVHEVEIRRKDLLPVFDHFHRAVGWNDRELRRERSTFSTGSYGVNQ SAVPAALQQPKTVSASSGANSDCGSSANLYISAQHVHGKFVGRGGISGLASPLLYQSPTNNNSGLLPFKPTPMSISPAADSNSMNSDVASLTHGSPSPGR NMGNEGQSSNGVLTSESSHASSNRSDLSANIIDEGMVNESPDFEQLFQEGYCKVATLSERGGEDKMARPREPEPEDPDEEDDDMLGGANGANLVRPCGLL MK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	1.4	0.8701
AT5G56240			unknown protein		Lus10008344 [exp]	2.0	0.8663
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	3.0	0.8415
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	6.0	0.7779
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	6.9	0.7663
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	7.1	0.8099
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	8.9	0.8257
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	10.4	0.8031
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	13.4	0.7663
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10030324 [exp]	13.8	0.7627

Compare expression of checked genes

Lus10018960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.