Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77670 279 / 1e-89 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 170 / 4e-48 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G80360 102 / 9e-24 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G36160 84 / 3e-17 Tyrosine transaminase family protein (.1) AT5G53970 77 / 6e-15 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT2G24850 71 / 3e-13 TAT3 tyrosine aminotransferase 3 (.1) AT4G28420 70 / 8e-13 Tyrosine transaminase family protein (.1.2) AT2G20610 67 / 7e-12 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28410 66 / 1e-11 Tyrosine transaminase family protein (.1) AT4G26200 64 / 1e-10 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033820 [exp] 486 / 9e-172 AT1G77670 172 / 2e-49 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 278 / 7e-90 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10004089 [exp] 276 / 4e-88 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023080 [exp] 177 / 4e-50 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10032388 [exp] 176 / 1e-49 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10033659 [exp] 87 / 4e-18 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017704 [exp] 84 / 2e-17 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017934 [exp] 84 / 2e-17 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10039861 [exp] 84 / 4e-17 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G124100 [exp] 581 / 0 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 274 / 3e-87 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175400 [exp] 272 / 2e-86 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G088426 [exp] 166 / 3e-46 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G079200 [exp] 162 / 2e-44 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175600 [exp] 139 / 1e-38 AT1G77670 395 / 1e-138 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G177000 [exp] 93 / 2e-20 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.017G014200 [exp] 91 / 1e-19 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014100 [exp] 85 / 9e-18 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 81 / 2e-16 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10018962 pacid=23149967 polypeptide=Lus10018962 locus=Lus10018962.g ID=Lus10018962.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAGCTATCGGGAGTTGCCAGGACGTTCGCTCCCTCTCCAATTCAAGAGCTTTCCCACTTAGCTCAGCGATGCAATGCCATCAACCTTGCTG AAGGCTTCCCTGATTTCCCTGCACCTCCGTCCATCAAATCCGCCGCCGTTTCCGCCATCAACTCCGACTTCAACCAGTACAGGCATGTGCAAGGAATTTG TGAGCTCTTGGCTACCAGTGTGAAGGAAATGTACGGATTGGAGGTTGACCCCGATACTGATATAGCCATTTGCTGCGGCCAAAGTGAGGCCTTTGCAGCT TCAATGTTTGCCATAATAGACCCTGGCGATGAGGTTCTGCTGTTTGATCCTTGTTATGAAACTTATGAAGCTTGCATTCGGTTGGCCGGGGGAACTCCTG TGTACGTTGCGCTTGACCCGCCTTGTTGGGCGTTGGATACTGAGAAATTCACGAGTTCGTTCACTAATCGAACCAAAGCTGTGATATTGAACAGTCCCCA AAATCCAACTGGGAAAGTTTTCTCCAAGGATGAGCTTGAGATTATTGCTGAAGCCTGCCGCACCAGAGATTGCCTAGCTGTCACTGATGAAGTTTACGAG CATATTACATATGACAATGTAAAACACATAACTCTGGCCTCACTTCCTGGAATGCACCAACGCACTATCATCACATCTTCACTATCAAAGACTTTTGGTG TCACAGGATGGAGGGTGGGCTGGGCAATCGCTCATCCTGCCTTTGCCGCTGCTATCAGAAACATTCATGTTAAGCTTACAGATTCCGCTCCAGCACCTTT CCAAGAAGCTGCACTGACTGCTTTGAGAAGTGGCTCTGGGTACTTTGAATCGCTCAGGAGAGATTATGAATCAAAAAGAGACTACATCGTGCAGCTGCTT GCCAGGATAGGTTTCAAGATTCATTTTAAACCTCAGGGATCATTCTTCTTATTTGTTGAACTTCCGGAAGCTTCTCCTCTTTCAGATGTAGGTCCTTGCT GCTTTTCAGTTTCCTGGTCTTTTAAGTATTATCATTGCAGAGATATATTGAATTCGAGCCATGTAACCCTTGCCGTCGCCTGCATTCTGGTTCAGGTAGA ATATGTTAAGGAGCTAATAGAACAAGCCGGGGTGGTGGCAGTACCAGGTCGTGGATTCTTCCATGACAATTCAGTACCAGATGAACTGCCCCACGGTGGC TCTGATTATCAGAAGAGGTACATTAGGTTTGCCTTCTGCAAAAGCAGTGCAACTTTGGAAGCTGCATCCCAACGACTTGGTAGGCTGCTGGATACTAAAG ACTCTTTGAAGCTGCCACCCTCCATTACCTAA
AA sequence Show only first row Show all	>Lus10018962 pacid=23149967 polypeptide=Lus10018962 locus=Lus10018962.g ID=Lus10018962.BGIv1.0 annot-version=v1.0 MEKKLSGVARTFAPSPIQELSHLAQRCNAINLAEGFPDFPAPPSIKSAAVSAINSDFNQYRHVQGICELLATSVKEMYGLEVDPDTDIAICCGQSEAFAA SMFAIIDPGDEVLLFDPCYETYEACIRLAGGTPVYVALDPPCWALDTEKFTSSFTNRTKAVILNSPQNPTGKVFSKDELEIIAEACRTRDCLAVTDEVYE HITYDNVKHITLASLPGMHQRTIITSSLSKTFGVTGWRVGWAIAHPAFAAAIRNIHVKLTDSAPAPFQEAALTALRSGSGYFESLRRDYESKRDYIVQLL ARIGFKIHFKPQGSFFLFVELPEASPLSDVGPCCFSVSWSFKYYHCRDILNSSHVTLAVACILVQVEYVKELIEQAGVVAVPGRGFFHDNSVPDELPHGG SDYQKRYIRFAFCKSSATLEAASQRLGRLLDTKDSLKLPPSIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10018962 [exp]	0	1
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	1.7	0.7608
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	3.2	0.7505
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	10.7	0.7500
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	13.8	0.7466
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10029715 [exp]	14.4	0.7370
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	16.9	0.7182
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	18.5	0.7366
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10029688 [exp]	19.4	0.7371
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	20.8	0.7168
AT4G32910			unknown protein		Lus10011625 [exp]	21.6	0.7493

Compare expression of checked genes

Lus10018962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.