Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27320 306 / 3e-104 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 303 / 5e-103 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 273 / 6e-91 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 110 / 2e-28 ATCXE18 carboxyesterase 18 (.1) AT5G62180 88 / 4e-20 ATCXE20 carboxyesterase 20 (.1) AT5G16080 84 / 1e-18 ATCXE17 carboxyesterase 17 (.1) AT5G06570 81 / 2e-17 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45610 76 / 7e-16 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 73 / 7e-15 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 72 / 2e-14 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000928 [exp] 369 / 9e-129 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 361 / 1e-125 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 284 / 3e-95 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 133 / 6e-37 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 121 / 4e-32 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10008189 [exp] 87 / 2e-21 AT3G63010 206 / 4e-67 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10008188 [exp] 85 / 7e-21 AT3G63010 111 / 5e-31 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10015988 [exp] 90 / 1e-20 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033548 [exp] 87 / 1e-19 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G040600 [exp] 328 / 1e-112 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 323 / 2e-110 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 296 / 3e-100 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 291 / 2e-98 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014302 [exp] 137 / 2e-38 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.004G092500 [exp] 132 / 1e-36 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.001G459400 [exp] 127 / 1e-34 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.010G127600 [exp] 85 / 7e-19 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.016G065000 [exp] 82 / 4e-18 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G253300 [exp] 82 / 4e-18 AT5G16080 173 / 9e-52 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10018963 pacid=23149975 polypeptide=Lus10018963 locus=Lus10018963.g ID=Lus10018963.BGIv1.0 annot-version=v1.0 ATGACGAGGATTAACGATGCCGGTGCGAATGAAAGCAAAACGGTGGTCCCTTTGAACACATGGGTCCTCATATCCAACTTTAAGTTGGTTTATAATCTCC TCCTCCGTCCTGATGGAACCTTCAATCGGCATTTGGCCGAATTCCTCGCCAGAAAAGTTTCTGCTAATGCAAACCCAGTTGATGGAGTGTTCTCATTTGA TGTCGTCGTTGACCGTGGCACAAATCTCCTTTGTCGGATCTATCGACCTTCAAATGGGGAAGAAGAACATCCCAACTTTGCTGAACTTGAAAAGCCTGTG AAGTCTGATGAATCTGATGTTGTTGTCTATGTCATCGTCTTCTTTCATGGCGGAAGCTTTGCACATTCGTCTTCGAATAGTGCAATTTACGACACATTGT GCCGCAGACTTGTAGGTCTTTGTAATGCTGTGGTGGTCTCTGTGAACTATAGGCATGCCCCCGAGCACCGTTATCCATGTGCATATGATGACGGCTGGTC AGTTCTTAACTGGATAGCTCTGGTGGTAACATTGCTCATCACTCATCACGTTGCTTTAAGAGCTGCTGAATCGGATATCGAAGTATTGGGCAACATATTG CTTAACCCGATGTTTGGCGGGGAAGGGAGAACAGTATCAGAGGCTAGATTGGATGGCAGATACTTTGTTTCTGTCCAGGATAGGGATTGGTATTGGAAAG CCTTTCTTCCTGATGGAGCTGATAGGGACCATCCAGCTTGTAATCCGTTCAGTCAAAGTGCGATGAGTCTCTCTGGAATGGAGAAGTTCCCCTAG
AA sequence Show only first row Show all	>Lus10018963 pacid=23149975 polypeptide=Lus10018963 locus=Lus10018963.g ID=Lus10018963.BGIv1.0 annot-version=v1.0 MTRINDAGANESKTVVPLNTWVLISNFKLVYNLLLRPDGTFNRHLAEFLARKVSANANPVDGVFSFDVVVDRGTNLLCRIYRPSNGEEEHPNFAELEKPV KSDESDVVVYVIVFFHGGSFAHSSSNSAIYDTLCRRLVGLCNAVVVSVNYRHAPEHRYPCAYDDGWSVLNWIALVVTLLITHHVALRAAESDIEVLGNIL LNPMFGGEGRTVSEARLDGRYFVSVQDRDWYWKAFLPDGADRDHPACNPFSQSAMSLSGMEKFP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	0	1
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	3.0	0.9330
AT1G05410			Protein of unknown function (D...		Lus10021915 [exp]	3.6	0.8969
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	6.9	0.9023
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Lus10035376 [exp]	7.5	0.9062
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	8.0	0.9144
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	8.4	0.9073
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	8.5	0.9077
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10036878 [exp]	9.5	0.9087
AT5G36930			Disease resistance protein (TI...		Lus10023487 [exp]	9.9	0.8746
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	10.7	0.9066

Compare expression of checked genes

Lus10018963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.