Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27290 465 / 2e-165 unknown protein AT1G54680 153 / 1e-44 unknown protein AT1G56180 76 / 5e-15 unknown protein AT2G21960 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033822 [exp] 595 / 0 AT5G27290 494 / 3e-177 unknown protein Lus10033821 [exp] 173 / 4e-51 AT1G54680 187 / 3e-58 unknown protein Lus10018965 [exp] 167 / 3e-49 AT1G54680 187 / 8e-59 unknown protein Lus10006532 [exp] 79 / 4e-16 AT1G56180 510 / 0.0 unknown protein Lus10005779 [exp] 62 / 1e-10 AT2G21960 465 / 6e-166 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029000 [exp] 474 / 2e-169 AT5G27290 451 / 5e-160 unknown protein Potri.010G171400 [exp] 73 / 4e-14 AT1G56180 500 / 6e-178 unknown protein Potri.005G084400 [exp] 53 / 1e-07 AT2G21960 449 / 8e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018966 pacid=23149982 polypeptide=Lus10018966 locus=Lus10018966.g ID=Lus10018966.BGIv1.0 annot-version=v1.0 ATGGGCATTGTTCTCTACTCCTTGGGAGTCTCGAGAATCAGCTGTTTCGGGACCTGGAGATTGAGAGCAGTAGGTTTAGAGCAAGTTGACAAGGAGCTCT CCATTGGAGACGAGAGAGCTGCTCTTTCTCTTGTTAGAGATTTGCAGGGAAAGCCAAATGGCCTTCGATGTTTCGGCGCTGCAAGGCAGGTGCCGCAAAG GCTGTACACATTGGACGAGCTGAAGCTAAATGGGATTGAAGCGAGTTCTTTGCTATCTCCTGTGGATGGAACTCTTGGTTCTATCGAGAGATATCTGCAG ATTGCTGGTGTTGTTGGAGGTGTTGCAGCCTGGAATGCATTTGGGTTTACTTCTCAGCAGATATTTTACCTATCTCTGGGGCTCTTGTTTATATGGACCT TGGATGCTGTGTCATTTAATGGAGGACTTGGCAGTTTAGTTCTTGACACTATTGGGCACAACCTCAGTCAGAAATATCACAACAGAGTCATTCAACATGA AGCTGGGCATTTCCTGATTGCCTACTTAGTCGGGGTTCTTCCAAAGGGATACACATTATCTAGCTTGGAAGCTCTGCAAAAGGAAGGATCTCTCAATATC CAAGCTGGGACGGCTTTCGTGGATTTCGAGTTCGTTGAAGAAGTCGGTAGAGCTAACTATTCTTATGATCTGAACTTTTACCTCTTGTTATCATATTTCA GTATTCTTCAAAACTTTTTCCATGCATTGCAGGTCAGTTCAGGCAAAGTTTCCGCCACGACTCTCAACAGATTCTCATGCATAGCGCTGGCTGGTGTAGC AACTGAGTACATCTTGTATGGATATTCAGAGGGAGGGCTTGCTGATATAAGCAAGTTGGACATGTTGCTTAAAGGGCTTGGTTTCACACAGAAGAAAGCA GATTCCCAGGTTAGATGGTCAGTTCTGAACACGATCCTGCTGCTGCGCCGCCATGGACAAGCTCGTACCAAACTTGCAGATGCAATGTCAATGCGCAAAT CTGTAGGGGCTTGCATTGGTGTCATAGAAGACAACATTGATGATGCAGATTTATAG
AA sequence Show only first row Show all	>Lus10018966 pacid=23149982 polypeptide=Lus10018966 locus=Lus10018966.g ID=Lus10018966.BGIv1.0 annot-version=v1.0 MGIVLYSLGVSRISCFGTWRLRAVGLEQVDKELSIGDERAALSLVRDLQGKPNGLRCFGAARQVPQRLYTLDELKLNGIEASSLLSPVDGTLGSIERYLQ IAGVVGGVAAWNAFGFTSQQIFYLSLGLLFIWTLDAVSFNGGLGSLVLDTIGHNLSQKYHNRVIQHEAGHFLIAYLVGVLPKGYTLSSLEALQKEGSLNI QAGTAFVDFEFVEEVGRANYSYDLNFYLLLSYFSILQNFFHALQVSSGKVSATTLNRFSCIALAGVATEYILYGYSEGGLADISKLDMLLKGLGFTQKKA DSQVRWSVLNTILLLRRHGQARTKLADAMSMRKSVGACIGVIEDNIDDADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27290			unknown protein		Lus10018966 [exp]	0	1
AT1G53250			unknown protein		Lus10028136 [exp]	2.4	0.9411
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	2.4	0.9500
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	2.4	0.9522
AT5G27290			unknown protein		Lus10033822 [exp]	2.4	0.9520
AT2G05310			unknown protein		Lus10001175 [exp]	2.8	0.9479
AT1G54680			unknown protein		Lus10018965 [exp]	3.2	0.9434
AT1G53250			unknown protein		Lus10042840 [exp]	4.2	0.9290
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	5.3	0.9387
AT2G01870			unknown protein		Lus10009946 [exp]	5.7	0.9360
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033026 [exp]	6.0	0.9052

Compare expression of checked genes

Lus10018966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.