Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04970 419 / 6e-146 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004149 [exp] 506 / 7e-180 AT3G04970 516 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10033823 [exp] 245 / 1e-79 AT3G04970 199 / 1e-62 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G041000 [exp] 478 / 2e-169 AT3G04970 520 / 0.0 DHHC-type zinc finger family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018967 pacid=23149988 polypeptide=Lus10018967 locus=Lus10018967.g ID=Lus10018967.BGIv1.0 annot-version=v1.0 ATGGGGACGCAGTGGATTCTGGTGTGTCACGGCCTCATCACCTTGCTTGTTGTGATCTCTTTCCTCTGCGGTCAATGGCCAATCTTTCAGGGAACTTTCA TCCAGCGCATCCATCACTTCCTCACTTTCGGTGCCTACGATTACTTCCAGAAGTTCATTGCGGCTGTGTTCGGGAGCAAAGGAACCGACTTTCTTCTCTC TCTCGAGTATTTCTGCTGCGATCGTCCAAACCCTATACTTCAGATTCTGTATGTGGCAATTATTGGAGGCATTTATTATTTGATTGTAAGTTCTTGTTTT GTCTACATTCCTGGATACTACCTGGGGGGAGTTCACAGATACATAAGCTTCACGGCAGTTGTTGTTGGTGTTGTGTTTTTTGTCTTAACAAGCTTTTCTG ATCCTGGAACTGTGAAGCCTGAAAACGTGTCACAATATCTCAATGCCTATCCTTATGACGATATCCTATACAAGGAAAAAGAATGTTCTACATACCTGCT AGATCAAAGCACTGCAGTATATGTAACCGTTGTGTTGCCCGGTTTGATCATCATTGTGGTTGGATGGCATTTCCTTCTTTGTCTATATGGAAGTGTTGCT ATTGGATTGGTTGTTGCAGGAAGATTGAAAGAATTAAGAGTTGTTGATATTCTAACTGTTTACTATGGGATAGAAAATACATACCGTGATTTAGCTCCTC ATGTCGTACAATGGCTGTTGAGCTCATACAACACTCAAATACTTCTCATGGTATTTCTTGCCGTAGTATCTCTCTTATTAGCTGGTTTCTTTGGTTACCA TGTCAACCTTTGTGTCACCAACACCACGACAAATGAGACTTTCAAGTGGCAAGAGCACTTAAGCTGGCGAAAGAAACTAAACGAAGCTCGAGCAAGTGCT GCAGCACTGAAAGCAAGCATCAGGGACTTGGGGAGGGAAGCAAAACCCCCAGAAAGCAAATGCAAATCCTTTTTCAGGAGATCTCCACTTGAAGATGCCG AGGTTGTTGTTACCAAGCAGAACATGTACGACAAGGGTTTCTTCCGCAACCTAGGTGAGGTCATAATTCCGTTCTCATCAAGACCGTCATTTGCTCAAAC GAAATCGAAACATGGCTGA
AA sequence Show only first row Show all	>Lus10018967 pacid=23149988 polypeptide=Lus10018967 locus=Lus10018967.g ID=Lus10018967.BGIv1.0 annot-version=v1.0 MGTQWILVCHGLITLLVVISFLCGQWPIFQGTFIQRIHHFLTFGAYDYFQKFIAAVFGSKGTDFLLSLEYFCCDRPNPILQILYVAIIGGIYYLIVSSCF VYIPGYYLGGVHRYISFTAVVVGVVFFVLTSFSDPGTVKPENVSQYLNAYPYDDILYKEKECSTYLLDQSTAVYVTVVLPGLIIIVVGWHFLLCLYGSVA IGLVVAGRLKELRVVDILTVYYGIENTYRDLAPHVVQWLLSSYNTQILLMVFLAVVSLLLAGFFGYHVNLCVTNTTTNETFKWQEHLSWRKKLNEARASA AALKASIRDLGREAKPPESKCKSFFRRSPLEDAEVVVTKQNMYDKGFFRNLGEVIIPFSSRPSFAQTKSKHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	0	1
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	1.0	0.9806
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	2.8	0.9672
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	3.5	0.9490
AT3G53210			nodulin MtN21 /EamA-like trans...		Lus10028351 [exp]	5.0	0.9387
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10021675 [exp]	5.5	0.9432
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	6.9	0.9572
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10043220 [exp]	9.9	0.9441
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10003821 [exp]	10.4	0.9502
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	10.6	0.9488
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	11.5	0.9362

Compare expression of checked genes

Lus10018967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.