Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033825 [exp] 265 / 3e-83 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033824 [exp] 181 / 3e-58 ND 44 / 8e-06 Lus10018972 [exp] 85 / 9e-19 AT5G36930 192 / 3e-51 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10013988 [exp] 79 / 1e-16 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001105 [exp] 73 / 1e-14 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10028961 [exp] 66 / 3e-12 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10024677 [exp] 61 / 4e-11 ND 42 / 2e-04 Lus10023372 [exp] 59 / 6e-10 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10018008 [exp] 58 / 1e-09 AT3G16210 82 / 6e-17 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035500 [exp] 54 / 3e-08 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 51 / 2e-07 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 50 / 4e-07 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 42 / 0.0002 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G145950 [exp] 42 / 0.0002 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 41 / 0.0006 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018968 pacid=23150002 polypeptide=Lus10018968 locus=Lus10018968.g ID=Lus10018968.BGIv1.0 annot-version=v1.0 ATGGCTGCAACAGTGAAGAACAGAGACCATTTCCTTAGAGAACCGATTGGGTTTGGGTTCGACCCACTTACGGATGACTACAAAGTGCTAAGGTGGATTA ACTACATTGGAGATCCTTATTACACAGAAGATGGACATTCTTTTTCCAAAGGATGGGATGCTGCTGAGGTTTACAGCTTGAAGGATCAATCATGGACACC ACTTGCTACTTGTAAGTCCTCTGTGGGTACTAACCCGGTCCGTCAGCACCATACATCTCGATACGAGATGCTTTACTGGTCGGGTTCGGACGGGGAGAGA ACATACATGCTGTCATTTGACATGAAGAAACAAGTGTTTGGTTCGACCTCCTTTATCAATCCAACATCAAGTTGGTTCGGTGAAACAGTCTGGCTGATGA AGGACTGCATCGTTGGTGTTAGTAGTAGTTATCGCTCCTTTGAGATACGGGCATTATTGAAATTTGGCTCGAAACAGTCTTGGACTAAGCTTTGTACGAT TCCCGAGTCCAATCTTCATGGGTGCAACCTCCAGGCAATATGGAAGGATGGATCTTATATGTTCGACAGCTACAATGGTGCAACTCCGAGTTTGTACGCT TACAAACCAGAGGACGGAAGCAGCTTTGGTTTTGAGGTAGAGAACATGAATCAGGAGTTGGAGATGGTGACATATGTTCCATCCAAGATTTCGCTATCCG GGTTGAAGATAAATGAATGA
AA sequence Show only first row Show all	>Lus10018968 pacid=23150002 polypeptide=Lus10018968 locus=Lus10018968.g ID=Lus10018968.BGIv1.0 annot-version=v1.0 MAATVKNRDHFLREPIGFGFDPLTDDYKVLRWINYIGDPYYTEDGHSFSKGWDAAEVYSLKDQSWTPLATCKSSVGTNPVRQHHTSRYEMLYWSGSDGER TYMLSFDMKKQVFGSTSFINPTSSWFGETVWLMKDCIVGVSSSYRSFEIRALLKFGSKQSWTKLCTIPESNLHGCNLQAIWKDGSYMFDSYNGATPSLYA YKPEDGSSFGFEVENMNQELEMVTYVPSKISLSGLKINE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018968 [exp]	0	1
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	6.1	0.8427
AT5G41270			unknown protein		Lus10035306 [exp]	8.2	0.8277
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	8.3	0.8299
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10033922 [exp]	11.3	0.8192
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10040068 [exp]	13.0	0.8207
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	18.2	0.8265
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	20.1	0.8190
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	22.4	0.8343
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	24.8	0.8137
AT1G32420			F-box and associated interacti...		Lus10018969 [exp]	26.0	0.8210

Compare expression of checked genes

Lus10018968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.