Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17540 46 / 6e-06 F-box and associated interaction domains-containing protein (.1) AT3G17280 44 / 3e-05 F-box and associated interaction domains-containing protein (.1) AT1G32420 42 / 7e-05 F-box and associated interaction domains-containing protein (.1) AT2G07140 42 / 0.0001 F-box and associated interaction domains-containing protein (.1.2) AT3G17570 42 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT3G24700 41 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT3G18340 41 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT1G11620 41 / 0.0003 F-box and associated interaction domains-containing protein (.1) AT3G23880 40 / 0.0003 F-box and associated interaction domains-containing protein (.1) AT2G27520 40 / 0.0005 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001105 [exp] 106 / 3e-27 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10018972 [exp] 97 / 3e-23 AT5G36930 192 / 3e-51 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10009424 [exp] 89 / 6e-21 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10018095 [exp] 84 / 5e-19 ND 49 / 4e-06 Lus10028961 [exp] 83 / 1e-18 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023372 [exp] 83 / 1e-18 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10018008 [exp] 82 / 3e-18 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10015408 [exp] 78 / 8e-17 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10029725 [exp] 77 / 2e-16 AT3G06240 74 / 3e-14 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058000 [exp] 64 / 4e-12 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.001G318300 [exp] 61 / 3e-11 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.012G099733 [exp] 56 / 3e-09 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.017G058900 [exp] 55 / 5e-09 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G318400 [exp] 55 / 7e-09 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.007G074084 [exp] 54 / 1e-08 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.012G014700 [exp] 51 / 1e-07 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.014G162600 [exp] 49 / 9e-07 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 48 / 1e-06 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.008G199800 [exp] 48 / 1e-06 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10018969 pacid=23149998 polypeptide=Lus10018969 locus=Lus10018969.g ID=Lus10018969.BGIv1.0 annot-version=v1.0 ATGAAGCGTTCTCGCAGCCACCGGAAGGAGAAAGCTGCTGCACGTTTACAGATCCAGAGAAGTCTGACGCAAAAAGTAGTCTCCGATCACCCTCAAAATA ACTGCATTCTACCATCTGATATCATCACTGAAATCTTAAAGAGGCTTCCCGACGGCAGCACCATCGTTAGGCTCCGTCGCGTCTGCATTTCGTGGTATCG CCTTCTCTCTGATCCTACTTTCATTCACTCCATTCTATCTTTCAGCTGCACAAACCCTAGTTCCGCAGACCACAAGGCCCAGATCCTAATTAAGGATAAA CTCTACGGCACTGACGATGGCACTTACTACCGCGTCGTTTACACTTTGTTGTCTTATAACACTTTGAAGCCCATCAGCACGGTGTCCGCTCAGCAGCCCG ATTTTCCCTGTGTTCTCGGCACGTCTTATATTGTACTAGGTCGAGGTTTGGATTTATCAATTGTGGGGTGTTGCGATGGGATAGTCTGCATTGCCGATAA AATGGATGCAAGGGCCTCTGACATCATCCTATGGAATCCGTCCACTTCCGAAACCAAGATTTTGCCGTGTTCTCCCTGA
AA sequence Show only first row Show all	>Lus10018969 pacid=23149998 polypeptide=Lus10018969 locus=Lus10018969.g ID=Lus10018969.BGIv1.0 annot-version=v1.0 MKRSRSHRKEKAAARLQIQRSLTQKVVSDHPQNNCILPSDIITEILKRLPDGSTIVRLRRVCISWYRLLSDPTFIHSILSFSCTNPSSADHKAQILIKDK LYGTDDGTYYRVVYTLLSYNTLKPISTVSAQQPDFPCVLGTSYIVLGRGLDLSIVGCCDGIVCIADKMDARASDIILWNPSTSETKILPCSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32420			F-box and associated interacti...		Lus10018969 [exp]	0	1
AT1G31040			PLATZ transcription factor fam...		Lus10036226 [exp]	1.0	0.9035
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	9.5	0.8755
AT3G22520			unknown protein		Lus10041202 [exp]	14.1	0.8805
AT4G03220			Protein with RNI-like/FBD-like...		Lus10006970 [exp]	15.7	0.8504
AT3G52110			unknown protein		Lus10039611 [exp]	16.6	0.8954
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	17.6	0.8922
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033459 [exp]	19.4	0.8707
AT1G77270			unknown protein		Lus10038311 [exp]	24.6	0.8678
					Lus10018968 [exp]	26.0	0.8210
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	29.5	0.8711

Compare expression of checked genes

Lus10018969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.