Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08860 402 / 2e-136 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61900 338 / 1e-111 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G07300 335 / 1e-110 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61910 338 / 3e-105 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033826 [exp] 567 / 0 AT1G08860 880 / 0.0 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Lus10043206 [exp] 306 / 8e-100 AT5G61900 684 / 0.0 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) Lus10032533 [exp] 120 / 2e-30 AT5G61910 387 / 6e-131 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10009733 [exp] 56 / 5e-09 AT1G08860 54 / 1e-08 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029100 [exp] 454 / 5e-157 AT1G08860 857 / 0.0 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Potri.012G108200 [exp] 338 / 1e-111 AT5G61910 827 / 0.0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.015G106400 [exp] 332 / 3e-109 AT5G61910 796 / 0.0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.003G055501 [exp] 87 / 2e-20 AT5G07300 95 / 3e-23 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine
Representative CDS sequence Show only first row Show all	>Lus10018973 pacid=23149999 polypeptide=Lus10018973 locus=Lus10018973.g ID=Lus10018973.BGIv1.0 annot-version=v1.0 ATGGCTGTTTTGTATGCCAAGAAGAATGATGGGAAACTGGAAGAAGTTGGCCGCACTGAAGTTATCTTGAATACCTTAAACCCTTCTTGGATTTCGAAAG TCAGAATTTCTTATCAGTTTGAGATATTGCAACCACTAGTCATACATGTATACGATGCGGATACTCGATACCATAACGTACCTGTGAAGTCGCTGAATTT GAAGGATCAATACTTTTTAGGAGAAGCCAATTGCATGCCCTCTGAGATTGTGACCAAACAAAACCGTACATTAACTCTACGCCTCCATAACAAAAGTGGA CATGCTGTTATCAGAAACTTAGGGACTGTCAGCATTTATGCTGAGGAGACAGTGGCCTCAAAAACTGCCGTAGATATTGCATTCCTGGAGAGTGGAGGTT CCATACCAATATGCAAGACAGACGTGGAAACCCCTATGTCTAACAATGCAGCACTTTGCAAGCAAGGAAAATCCGTTAGTTATATTGAATGTCTCGATTT CAACAGCAGTGGCAATCATACACTCATTGGTAAGATCCAGAAATCTATCTCAGACCTGGAAATTCTTCACAGAGAGAAGGCCAGTGTGAATTTAACTTTG CCAGCTCATCATGGCCGTGAGAAGGTATTGAAGGGGCAGCTATTTGTGGAGAAAGAACTGTTCAGTTTTCTAGATTACATGTCAACTTCAAACGGAAATC CACGGACGCCAGATTCCTTGCACTACATTGACCCGTCTGGCCGCTTGAATTCTTACCAGAAGGCCATTATGGAAGTAGGGGAGGTCATACAGTTCTATGA TTCTGATAAGCGTTTCCCAGCTTGGGTCTTCGGAGGGAGGACACCTGATGGTGGAGTATCTCATTGTTGCAACTTGAATGGAACTCCAATTGGCTTGGAG GCTGGTGTGCTAACTGATTTTCAAGAAACCAAGGATGCTATCGTGTTAGCATCTGATCTTCCATTGTCAATCCTTATAGTCGGAATCCTAGATGCTGATA ATGGTCATCCACTAGAGAGTTCAACGGGAAGAGTGGCTACTAGAGATATTATACAATTTGTCCAATGCGGGAAGTTCACAGTGACTAACTTTAGGCTTCT TTTTTGCTTGCTACAGTGTTGTGCTCGGTTTTATTTGCCTTTGTGTTGGCTCTGTTAG
AA sequence Show only first row Show all	>Lus10018973 pacid=23149999 polypeptide=Lus10018973 locus=Lus10018973.g ID=Lus10018973.BGIv1.0 annot-version=v1.0 MAVLYAKKNDGKLEEVGRTEVILNTLNPSWISKVRISYQFEILQPLVIHVYDADTRYHNVPVKSLNLKDQYFLGEANCMPSEIVTKQNRTLTLRLHNKSG HAVIRNLGTVSIYAEETVASKTAVDIAFLESGGSIPICKTDVETPMSNNAALCKQGKSVSYIECLDFNSSGNHTLIGKIQKSISDLEILHREKASVNLTL PAHHGREKVLKGQLFVEKELFSFLDYMSTSNGNPRTPDSLHYIDPSGRLNSYQKAIMEVGEVIQFYDSDKRFPAWVFGGRTPDGGVSHCCNLNGTPIGLE AGVLTDFQETKDAIVLASDLPLSILIVGILDADNGHPLESSTGRVATRDIIQFVQCGKFTVTNFRLLFCLLQCCARFYLPLCWLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Lus10018973 [exp]	0	1

Compare expression of checked genes

Lus10018973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.