Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54390 291 / 3e-98 ING2 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) AT3G24010 64 / 9e-12 ATING1 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033830 [exp] 320 / 5e-110 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Lus10043140 [exp] 68 / 5e-13 AT3G24010 273 / 5e-93 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10032609 [exp] 62 / 1e-10 AT1G04610 248 / 7e-75 YUCCA 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G033800 [exp] 300 / 3e-102 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Potri.013G058800 [exp] 299 / 5e-102 AT1G54390 372 / 4e-131 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Potri.003G174000 [exp] 70 / 6e-14 AT3G24010 281 / 5e-96 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018974 pacid=23149984 polypeptide=Lus10018974 locus=Lus10018974.g ID=Lus10018974.BGIv1.0 annot-version=v1.0 ATGGCAATCGCACGAACAGGCGTCTATGTTGACGATTACTTAGACTACGCGAGCACGTTGCCTGCTGAGCTTAAAAGGCTTCTTAATACCATCAAGGAAC TCGACAACCGATCTCAGTCGATGATAAATCAAACTAGGCAAGATACAAACTATTGCCTGGGGTTAGCTTCGCAGAACTCAAGGAAAGAAAATGGTTATGG TTACAATAACAAGAACAATTTTGACGAGGATGATGTAACTGAAAGATTCAAGGATATTGAGGAGAATCAAGACAACGCATTAAGTTTGTGCACAGAGAAG GTTTTATTGGCACGGCAGGCTCATGATCTTATAGACAGCCATATAAAACGTCTTGATGAGGATTTGAACAATTTTGCAGAAGATTTAAAGCAAGAGGGAA AGATAGCTCGAGATGAAATAGCTATACTCCCACCACTTCCAATTATGATTCCAAAACCTGAAAAGCGCAAGCAGTTCTATGGAACACCTCAATCAAGGAG GATGGATTTCAGGGACAGAGATTGGGATCGAGAACGTGATAGAGATTTTGAGCTCATGCCCCCACCTGGAAGCAATAGAAAGGACTTTGCAGTGCCTGTT GATATGGATCAACCCATTGATCCCAACGAGCCAACCTATTGTGTGTGCCACCAGGTATCATTTGGGGATATGATTGCATGCGACAACGAAAGTGTAAGCA CCTCCCTTTTGTATGATCTTTTTCTTGTTCACTCTCTCTGCATATCGCAGGGAACCAAGGACAAGGTGTTTGTTTCCTTCACATCAGGGCTCATGTTTTT TGTTGGTGGTTATGGCAGTGCGAAGGAGGAGAATGGTTCCATTATGCCTGTGTTGGGCTGA
AA sequence Show only first row Show all	>Lus10018974 pacid=23149984 polypeptide=Lus10018974 locus=Lus10018974.g ID=Lus10018974.BGIv1.0 annot-version=v1.0 MAIARTGVYVDDYLDYASTLPAELKRLLNTIKELDNRSQSMINQTRQDTNYCLGLASQNSRKENGYGYNNKNNFDEDDVTERFKDIEENQDNALSLCTEK VLLARQAHDLIDSHIKRLDEDLNNFAEDLKQEGKIARDEIAILPPLPIMIPKPEKRKQFYGTPQSRRMDFRDRDWDRERDRDFELMPPPGSNRKDFAVPV DMDQPIDPNEPTYCVCHQVSFGDMIACDNESVSTSLLYDLFLVHSLCISQGTKDKVFVSFTSGLMFFVGGYGSAKEENGSIMPVLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Lus10018974 [exp]	0	1
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10027941 [exp]	43.3	0.4422
AT1G72190			D-isomer specific 2-hydroxyaci...		Lus10009456 [exp]	71.6	0.4423
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	91.9	0.3992
					Lus10020633 [exp]	109.7	0.4054
AT5G36210			alpha/beta-Hydrolases superfam...		Lus10032765 [exp]	129.4	0.4093
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10000216 [exp]	130.7	0.4011
AT4G17920			RING/U-box superfamily protein...		Lus10000487 [exp]	179.1	0.3717
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10036961 [exp]	183.0	0.3835
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10023445 [exp]	232.1	0.3606

Compare expression of checked genes

Lus10018974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.