Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27240 228 / 3e-62 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04960 206 / 7e-58 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT5G18740 204 / 1e-57 Domain of unknown function (DUF3444) (.1) AT5G18730 205 / 3e-57 unknown protein AT5G18750 210 / 9e-57 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G05110 182 / 2e-50 Domain of unknown function (DUF3444) (.1) AT4G27980 183 / 4e-49 Domain of unknown function (DUF3444) (.1) AT3G06340 184 / 6e-49 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT3G04980 178 / 1e-45 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 154 / 2e-38 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042540 [exp] 545 / 0 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 322 / 3e-95 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 319 / 3e-94 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 250 / 1e-69 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 247 / 2e-69 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 240 / 1e-66 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 155 / 3e-39 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 150 / 3e-37 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 147 / 1e-36 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029500 [exp] 327 / 1e-96 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 313 / 1e-91 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 254 / 9e-72 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 173 / 1e-44 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 171 / 5e-44 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 169 / 2e-43 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196301 [exp] 154 / 3e-43 AT5G18730 158 / 1e-46 unknown protein Potri.003G171200 [exp] 167 / 6e-43 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 153 / 4e-38 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 145 / 1e-35 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10018975 pacid=23149977 polypeptide=Lus10018975 locus=Lus10018975.g ID=Lus10018975.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTACTTATGGTTTACTGTTCAAGATGCTTTCACAGTTGAGAGTTAGGGTTTTTTTACTCGCTGTCAGTTTGTCACTGCTTGACCGCTTTT ATTTGATTTTGTCGTCGCAGATGAATGTGAGACAGAGTAATGACAATGACATTGAATCGAACACAGAAGAAGGGGTATATATTTGTCATGATCCAGAGTT CAACAATTTCGACAAGGATAGGAGTAAAAATTGCTTTGCCGTTGGTCAAACTTGGGCTATGTACGCGAATGAGGATTGCATGCCGAGGTTCTACGCTCGG GTTAAGAAAATGCTCTCTCCAGGTTTCAAGCTGCAGATAACTTGGCTAGAGGCCTGTCCACATACCGAAGAGGAGAATGATTGGGCTGATGGAGATTTGC CTATTTCATGCGGTACATTCGAGTTGGGGGAAACTGAGGAGGTTGTAGATCATCTGATGTTTTCGCATAAAGTGAAATGTATAACGGGAAAGAAGAAGGA CACTTATATTATTTACCCTGAAAAAGGGGAAACATGGGCGCTCTTCAAAGACTGGGATATGAAATGGGGCTGTGAACCAGAAAGGCATAAGCCACCATAT AGGTATGACTTCGTGGAAATTCTGTCAAGTTTCAGGGCAGAAGTCGGTGTTATGGTTGGTCGCCTTTGTAAGGTGGAAGGTTTTGTTAGCATCTTTCAGC AAGTTGGTGATGACATGGTTAGCACATTTCCTGTAGCTCGAGGTGAGATGTACAGATTTTCTCATCGAGTTCCATCATGTGGAATAACTGGCATGGAAGG GCTAGGTGTCCCTACTGGTTCTTTTGAACTTGATCCTGCTTCTTTGCCTAGCAACCTTTACAAGGTTGACATCTCCGCTGATGTGCAGACGGAAGGGGAC TCATATTCCTACTCAAGAAACGACAAACCGGAACTCACAGGGACTGACCATGAAAGACCGGATGTAGTATGTGGGTTACCAGCAGTACCACCAAATGTTG ATGTCAAGAAGCATATGCAGGTATATGCGGGTCGTCGTTTTGGTGATGAAATTGTCAATAACATCCAGCCATTTGGACCGAGTCCTCCAGTTGATGTCAA ACAGAAGATCAGTTGCTGGAGAGAATGTGAAACTGATGAATTCAGAGATTTCTTAAACCCAAACAAAGCACCCGTGGACGTGAGCAAGAGAAGTGATGAG CTCATAGTAAACATGGTTATTGACAATGAGAACGCTGACAAGCTTATGAATTCTACTAGAGATGAGAATGAAGCACAACTAAGTAATTCTTCCGTTCATC AGGATGAACCGATGCATGTACATACGACGGTTGAATGCACTCAAATGTCCCGAAAGCGCAAAGATGTCTCGGAGGAGATACTTGGTTCAAAAAAACAAAG ATCTGAGGTGGAAGCTCAAGTGCCGCAGATTTCCTCGAGTAACAGTGATAAAGACGGAGTAACTGTAGATTATGGTCATGTTCGCAACCAGGAATTGGAG TTGAAGGAAGCAGAGTTATCTTCGCTGAAGGAAAGAATTAAGACTTGTAGGATGGAGCTAGAAAGAACCCAAGTTGCCCTTCAAGAGAGACAAGGGGATC TGCTTGCCAAAGAGGATTCTCTGCAGGCCATTGAGAAGTTGATTAAGGAAACCAACTTGCAACTTGAGAACAGAGAGAATCAATACAAGGCAATAAGGCT GTCTATCATGCAGTGTTCGGGGGAGCTCCGCTCTAAACAAAGCCAACTCAAGTTCCTTGAGCGGTCTATTCGTGATTCCATGACAAAAGAGAAGGCACTC CATTATGTGAAGAAAGAAGTAAGGGAATCTTGTCGAGTTCTCGAGTTGAAAGAAAAGGAATTATCTGATATACAAAAGACCATCGGGGTGAAAAACAAAG TTCTTGTTGTGAAGGCGAAGCTGCTGGAGGAAATAAAATCAAAGCTTGCACTTAATACAGAACATCACAAAGCAATGGAAGAACATCATATTGACGTGAA AAATTCAGTCATAGAGCTGCAGCAACAACTAATACATTATCAAGAGTTGGCAAAAGATCAACTTTTGGATGCAGGTAATGATAGGGATCTGGTGTTGTGC ATTGACGAGCATCTGAGGAAACATGATCTTCTCCAAAGTGAAGTTTCCTCCGCTATGCTACAGTTACCAGATCCGGCCAAATGGGTACTAGAGGTAGTAA TGCATGGGTTCTATCCTCCCCTTTCAGCAAACAGGGAGAGGGACTACGATCTATCTGTCATGAGGAGGAGGTGTATTACTTTGTTGGAACATTTACTGAA GATGAGACCATGGATAACATCTGATGTAAGAGGAGAGGCAATTAAGCTAGCTAGGGAGTGGAAAGCTAGAATGATGAAGAAACGAGCAACTTCTTTAGAA GTGTTGGCCTTGCTGCAGCTTATATCTGCTTTTGAGTTGGTCTCTGATATAGGTGCTGATGAAGTTAGACATCTGGTTAGTAGTTGCATTCCTAGGAAAG GAAACGGCAGTGAAACATGGGAATCTCTCGGAGTTATGGATGACTTAGCAGCTGAGGACAACCCAGATGAGTTCATAGGCGAGTGA
AA sequence Show only first row Show all	>Lus10018975 pacid=23149977 polypeptide=Lus10018975 locus=Lus10018975.g ID=Lus10018975.BGIv1.0 annot-version=v1.0 MAAATYGLLFKMLSQLRVRVFLLAVSLSLLDRFYLILSSQMNVRQSNDNDIESNTEEGVYICHDPEFNNFDKDRSKNCFAVGQTWAMYANEDCMPRFYAR VKKMLSPGFKLQITWLEACPHTEEENDWADGDLPISCGTFELGETEEVVDHLMFSHKVKCITGKKKDTYIIYPEKGETWALFKDWDMKWGCEPERHKPPY RYDFVEILSSFRAEVGVMVGRLCKVEGFVSIFQQVGDDMVSTFPVARGEMYRFSHRVPSCGITGMEGLGVPTGSFELDPASLPSNLYKVDISADVQTEGD SYSYSRNDKPELTGTDHERPDVVCGLPAVPPNVDVKKHMQVYAGRRFGDEIVNNIQPFGPSPPVDVKQKISCWRECETDEFRDFLNPNKAPVDVSKRSDE LIVNMVIDNENADKLMNSTRDENEAQLSNSSVHQDEPMHVHTTVECTQMSRKRKDVSEEILGSKKQRSEVEAQVPQISSSNSDKDGVTVDYGHVRNQELE LKEAELSSLKERIKTCRMELERTQVALQERQGDLLAKEDSLQAIEKLIKETNLQLENRENQYKAIRLSIMQCSGELRSKQSQLKFLERSIRDSMTKEKAL HYVKKEVRESCRVLELKEKELSDIQKTIGVKNKVLVVKAKLLEEIKSKLALNTEHHKAMEEHHIDVKNSVIELQQQLIHYQELAKDQLLDAGNDRDLVLC IDEHLRKHDLLQSEVSSAMLQLPDPAKWVLEVVMHGFYPPLSANRERDYDLSVMRRRCITLLEHLLKMRPWITSDVRGEAIKLAREWKARMMKKRATSLE VLALLQLISAFELVSDIGADEVRHLVSSCIPRKGNGSETWESLGVMDDLAAEDNPDEFIGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10018975 [exp]	0	1
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	3.2	0.9371
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	6.4	0.9431
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	6.9	0.9336
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	7.2	0.9304
AT5G16850		ATTERT	telomerase reverse transcripta...		Lus10026080 [exp]	7.7	0.9166
AT5G11350			DNAse I-like superfamily prote...		Lus10013119 [exp]	15.7	0.8899
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	17.0	0.9006
AT5G04885			Glycosyl hydrolase family prot...		Lus10033393 [exp]	18.5	0.9228
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	18.5	0.9151
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	20.8	0.9238

Compare expression of checked genes

Lus10018975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.