Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 1231 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 615 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 578 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 577 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G03580 570 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 556 / 0 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 550 / 2e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 524 / 6e-172 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 522 / 6e-170 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 514 / 4e-166 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007806 [exp] 598 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 596 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 584 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 552 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 549 / 0 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 544 / 3e-179 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013578 [exp] 551 / 7e-179 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004081 [exp] 544 / 1e-177 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 537 / 9e-176 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 1518 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 645 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 628 / 0 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 611 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 610 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 594 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 583 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 578 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 571 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 560 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018978 pacid=23149991 polypeptide=Lus10018978 locus=Lus10018978.g ID=Lus10018978.BGIv1.0 annot-version=v1.0 ATGATTCGAGGGTCATTCTCAAATCTCAATCTTCTTCGTTTTCCAACAAATTTCAAGCAGCAAAGGTCGCTCATTTTCAATCCAGTTTTCTCTACCATCA ATCACCACAAGTATTACTCTAAGTATGTTTCCAAACCCCAACTAGCCTTTCACGTGTATGATGAAACTTCTCACCCACAGAATGAAGGGATTTCCAACGT AACTGATTTACTCTACTTGATGGACCAGCCTAATATTAGGCCAAATTCTCAAACCTATCTATGGCTTCTGGATTCGTGTTTTAGTTCTGGCTCATTAGTT GAGTACCAAAAGCTTCATGGGAGGATTTTAAAGGAGGGGTTTGATAGAGAAAGCTTAGTATGTGATAAGCTTATCGACATATGCTTTGCGGTTGGTGATT TAAACGGTGTCATTAAAGCTTTCGAGGATATGCCCGAGAGAAGCATACATACTTGGAATAAGATATTATCAGGGTTCTCTGCGAGGAAAATGAGTAATAG GGTCATTGGACTTGTCTCTCAAATGCTTGGAGATGCTGTCAATCCCACCGAAGTTACGTTTGCTGGTGCTTTGAGGGCATGCAATAATGATATTCTCAAT CTTCGTTGCGCCGAGCAAATTCATGCCAAGATTTTTTGTCATGGTTTGGGTTCTAATCCAATAGCATTGAATCCTCTGATTGATTTGTATGCTAAAACGG GGTTCGTCAGTTCAGCTAAACGGGTTTTTGACAACTTAGATTGGAAAGATAGTGTTTCCTGGGTTGCTATGATCTCCGGTTTCTCACAAAATGGGTTTGA AGTTGAGGCTGTGCACATCTTTTCTGAAATGCATGTACAAGGCACATTACTCACCCCTTATGTTTTTTCTAGTGTCTTAAGCGCCTGTACCAAGATAGAG TTGTTTAACACCGGTATGCAGCTTCATGCCCTGATTTTGAAGGAGGGATTTTCGTCGGAAATATATGTATGCAATGCTTTGGTGACATTGTATTCTCGTT TAGGTAATTTCATATCCGCAGAACAAGTTTTCAGCCAACTAAAGCAAAAGGACGGGGTTTCCTACAATTCACTAATTTCTGGGCTAGCTCAACAAGGTTT TAGTGATAGAGCTCTGGACCTATTTGAGAAAATGCAGCTGGAAGGTCTAGATCCAGATTGTGTTACTGTGGCAAGTGTACTGAGTGTTTGTGCCTCAACT GGAGCTTTTGCTATGGGGAAACAACTCCATTCCTATGCACTAAAAGCAGGAATGTCTGCAGATATTATAATTGAAGGTGCATTATTAGATCTTTATGTGA AATGCTCAGACATGAAAACTGCACAAGAGTTTTTCTTCACTACACAGAATGATAATGTGGTTTTATGGAATGTGATGCTTGTCGCTTATGGACAATTAGA TGATCTGAGTCAGTCTTTTAGACTATTTAAAGGAATGCAGGTTAAAGGCCTGATACCTAACCAGTTCACATATCCAAGTATTTTAAGGACATGCACCTCG TTGGGTGCTCTTGATCTAGGTGAGCAGATTCATACATTGGCCATAAAGACTGGTTTTCAGTTTAATGTGTATGTCTGCAGTGTGCTAATTGATATGTATG CAAAACATGGAAAGTTAGATACCGCACTTGCAATTCTTCGAAGACTCGGCAGGGAAGATGTTGTGGCATGGACAGCTATGATTTCCGGGTGCACACAACA TGATTTGTTTGATGACGCTATAAGACTTTTTGAGGAAATGCTAAGGCGTGGAATTCAAGCAGATAATATAGGGTTTTCTAGTGCAATCAGTGCATGTTCT GGAATACAAGCACTTAATCAAGGACAGCAAATTCAAGCCCAAACATACGTATCTGGTTATTCTGGAGATCTTTCGATTTGTAATGCGCTTGTTAGTCTCT ATGCAAGATGTGGAAAACTTCGAGAAGCATACTTAGTTTTTGATAACATGAAAACGAAAGATAATATATCATGGAATGGGTTAATATCAGGGTTTTCTCA AAGCGGACATCTTGAGGAAGCACTGAAAGTGTTTAGCCAAATGAATACAGCTGAAGTAGAACCCAGTGTTTTCACATTCACTTCTGCGGTCAGTGCAGCT GGAAATCTAGCAGATATTAAACAAGGAAAGCATATACAAGCTATGATCTTTAAAAGAGGGTTTGACTCGGAAATTGAGATTTCTAATGCTTTGATCACAA TGTATGCGAAGTGCGGTAGCATTGGCGATTCTAAGAGAAAGTTCCTTGAGATGCAGGAAAAAAATGATATTTCTTGGAATGCCATGATCACTGCTTACTC TCAACATGGAGATGGACTGGAAGCAGTAGGTCATTTTAAGAACATGAAACAGGCTGGTGTTTTGCCAAACTATGTAACCTTTGTGGGAGTCTTAACAGCC TGTAGCCATGTTGGATTGGTAAATGAGGGTCTCTGCTACTTTGAGTCCATGTCCAAAGAGTATGGTTTAGTACCCAAACCAGAACATTATGCTTGTGTTG TAGACCTTCTCAGTCGAGCTGGTCTTTTGAGCCGTGCGAAAATTTTTGTAGAGGAAATGCCAATAAGACCAGATGCAATGGTTTGGAGGACTCTTTTGAG TGCCTGTGTAGTCCATAAGGATGTTGAACTGGGAGAACTTGCAGCTCAACATCTTCTGGATCTAGAACCTAGAGATTCAGCAACTTATGTTCTACTATCA AATATGTATGCAGTATCAAGAAAATGGAATTATAGGGACCGGACCAGGCTAATGATGAAAAATAGGGGAGTGAAGAAAGAGCCAGGCCGTAGTTGGGTTG AGGTTAAGAACAAAAGTCATGCATTCTATGTTGGCGATAGACTTCATCCCCTGGCCGATAAAATATATGAATATCTGGACAAACTTAACGATCGAGCAGC TGAAATCGGTTATGTTCAAGATCAGAATAGCCTTCTAAATGAAACAGAGCTGGAGCAGAAGGATCCAACTCAATATGTTCATAGTGAAAAGTTGGCCATA ACTTTTGCACTTCTTAGTTTGCCTGACAGACTCCCCATACGTGTAATGAAAAACCTCCGTGTCTGTAATGATTGTCACAATTGGATCAAGTTTGTATCAA CGATTTCAAATAGGGAGATTGTGGTGAGGGATGCCTACCGGTTCCACCATTTCGAGGAAGGTACCTGTTCGTGTAAAGATTACTGGTAA
AA sequence Show only first row Show all	>Lus10018978 pacid=23149991 polypeptide=Lus10018978 locus=Lus10018978.g ID=Lus10018978.BGIv1.0 annot-version=v1.0 MIRGSFSNLNLLRFPTNFKQQRSLIFNPVFSTINHHKYYSKYVSKPQLAFHVYDETSHPQNEGISNVTDLLYLMDQPNIRPNSQTYLWLLDSCFSSGSLV EYQKLHGRILKEGFDRESLVCDKLIDICFAVGDLNGVIKAFEDMPERSIHTWNKILSGFSARKMSNRVIGLVSQMLGDAVNPTEVTFAGALRACNNDILN LRCAEQIHAKIFCHGLGSNPIALNPLIDLYAKTGFVSSAKRVFDNLDWKDSVSWVAMISGFSQNGFEVEAVHIFSEMHVQGTLLTPYVFSSVLSACTKIE LFNTGMQLHALILKEGFSSEIYVCNALVTLYSRLGNFISAEQVFSQLKQKDGVSYNSLISGLAQQGFSDRALDLFEKMQLEGLDPDCVTVASVLSVCAST GAFAMGKQLHSYALKAGMSADIIIEGALLDLYVKCSDMKTAQEFFFTTQNDNVVLWNVMLVAYGQLDDLSQSFRLFKGMQVKGLIPNQFTYPSILRTCTS LGALDLGEQIHTLAIKTGFQFNVYVCSVLIDMYAKHGKLDTALAILRRLGREDVVAWTAMISGCTQHDLFDDAIRLFEEMLRRGIQADNIGFSSAISACS GIQALNQGQQIQAQTYVSGYSGDLSICNALVSLYARCGKLREAYLVFDNMKTKDNISWNGLISGFSQSGHLEEALKVFSQMNTAEVEPSVFTFTSAVSAA GNLADIKQGKHIQAMIFKRGFDSEIEISNALITMYAKCGSIGDSKRKFLEMQEKNDISWNAMITAYSQHGDGLEAVGHFKNMKQAGVLPNYVTFVGVLTA CSHVGLVNEGLCYFESMSKEYGLVPKPEHYACVVDLLSRAGLLSRAKIFVEEMPIRPDAMVWRTLLSACVVHKDVELGELAAQHLLDLEPRDSATYVLLS NMYAVSRKWNYRDRTRLMMKNRGVKKEPGRSWVEVKNKSHAFYVGDRLHPLADKIYEYLDKLNDRAAEIGYVQDQNSLLNETELEQKDPTQYVHSEKLAI TFALLSLPDRLPIRVMKNLRVCNDCHNWIKFVSTISNREIVVRDAYRFHHFEEGTCSCKDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	3.2	0.9072
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	3.7	0.9101
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	3.9	0.8971
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	4.9	0.8845
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	7.2	0.8966
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10038928 [exp]	10.5	0.8791
AT4G32910			unknown protein		Lus10038723 [exp]	11.0	0.8933
					Lus10019215 [exp]	12.5	0.8523
AT1G63130			Tetratricopeptide repeat (TPR)...		Lus10029737 [exp]	14.5	0.8789
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	15.1	0.8533

Compare expression of checked genes

Lus10018978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.