Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05000 286 / 3e-100 Transport protein particle (TRAPP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033832 [exp] 359 / 4e-129 AT3G05000 285 / 1e-99 Transport protein particle (TRAPP) component (.1) Lus10004135 [exp] 303 / 1e-106 AT3G05000 292 / 1e-102 Transport protein particle (TRAPP) component (.1) Lus10001721 [exp] 249 / 3e-84 AT3G05000 241 / 1e-80 Transport protein particle (TRAPP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031000 [exp] 301 / 2e-106 AT3G05000 312 / 1e-110 Transport protein particle (TRAPP) component (.1) Potri.005G044300 [exp] 275 / 5e-96 AT3G05000 286 / 3e-100 Transport protein particle (TRAPP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [flax] [poplar] HNOX-like PF04051 [flax] [poplar] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Lus10018981 pacid=23150006 polypeptide=Lus10018981 locus=Lus10018981.g ID=Lus10018981.BGIv1.0 annot-version=v1.0 ATGGGAAGAGAAGTGTCGGAGAGCTGCATCGACAGCTTACTCACCGAGATGGTTTCTTCCTACTGCAATCGTTTCTACGCCAATAATTCTGACCTCGCAG CCCGCCGGATCGAGGCCATTGGATATCAAGTCGGCCACCAGCTCTCCGAGCGGTATACGATGGAGAGACCTCGGTTCGGTGATCATCTAGAGGCAATAAA GTTCATCTGCAAGGACTTCTGGTCTGAGCTTTTCAAGAAGCAGATAGATAACTTGAAGACAAACCATAAAGGAACCTTTGTGTTGCAAGACAATCGATTT GGTTGGCTTGCACGGATGTCATTGGATCCAGGGGTGGAGAAGAGTCTTCCCCGAGATCCTGAAAAACTGGCTGAAAGTAAGACGGGTCAAGCAATGGGGA TGTATCTATATTTCCCATGCGGGATCATTAGAGGAGCTCTTTCAAACTTGGGGATCACTTGTACAGTTTCAGCTGATATCTCTAAACGTCCAGCTTGTTC GTTTGTGGTTCGGATAAAGGCTTGA
AA sequence Show only first row Show all	>Lus10018981 pacid=23150006 polypeptide=Lus10018981 locus=Lus10018981.g ID=Lus10018981.BGIv1.0 annot-version=v1.0 MGREVSESCIDSLLTEMVSSYCNRFYANNSDLAARRIEAIGYQVGHQLSERYTMERPRFGDHLEAIKFICKDFWSELFKKQIDNLKTNHKGTFVLQDNRF GWLARMSLDPGVEKSLPRDPEKLAESKTGQAMGMYLYFPCGIIRGALSNLGITCTVSADISKRPACSFVVRIKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05000			Transport protein particle (TR...		Lus10018981 [exp]	0	1
AT3G05000			Transport protein particle (TR...		Lus10033832 [exp]	1.4	0.8742
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	1.4	0.8567
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	4.5	0.8296
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10008555 [exp]	5.2	0.8443
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	6.6	0.8431
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	7.9	0.8262
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	9.8	0.8275
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	11.8	0.8134
AT2G02410			unknown protein		Lus10026272 [exp]	12.5	0.8098
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	12.7	0.8159

Compare expression of checked genes

Lus10018981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.