Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27210 178 / 6e-56 Protein of unknown function, transmembrane-40 (.1) AT3G05010 175 / 1e-54 Protein of unknown function, transmembrane-40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018985 [exp] 296 / 5e-102 AT3G05010 417 / 9e-148 Protein of unknown function, transmembrane-40 (.1) Lus10033835 [exp] 293 / 8e-101 AT3G05010 420 / 4e-149 Protein of unknown function, transmembrane-40 (.1) Lus10040523 [exp] 107 / 2e-28 AT3G05010 327 / 1e-112 Protein of unknown function, transmembrane-40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031200 [exp] 202 / 4e-65 AT3G05010 431 / 1e-153 Protein of unknown function, transmembrane-40 (.1) Potri.005G044700 [exp] 201 / 7e-65 AT3G05010 431 / 2e-153 Protein of unknown function, transmembrane-40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10160 [flax] [poplar] Tmemb_40 Predicted membrane protein
Representative CDS sequence Show only first row Show all	>Lus10018984 pacid=23149990 polypeptide=Lus10018984 locus=Lus10018984.g ID=Lus10018984.BGIv1.0 annot-version=v1.0 ATGCGCAATCTTGGGGAACTTCTTCTCCCAGTTTCTCAAGTTCCATCAATCTCGCTTCCCCAAAACCCTAATTCGACGTTCCACGGAGGGGCCTTCAATA CCCCAGGATCCTTCAATTGGCTCTTCCACTGCCACGGTTTTTTCCACAATGTCACTTTAATTCTAGCTTCCCTCGGTTTCGTCCTCTACCTCGCTTTCCA GGCCAAGAAGAGTTTCACCAAGCTCTCCAATGGCCGATCGCATATCATGGTTGCCTATTACGGGAGTCTCTGGCTCGTTAGCTTGCTCAACCTTTGTTGG TCTCTCTTGCAGGCATTAGAGTGCACCCCAGGAAAGGAACAAACTTGGAATGTGCTATCGCTGTTTACGACATCAGGAATGTTGTTCTTGGAAGTTAGCT TGATCGCCTTTTTGCTCCAAGGAAATTATGCAAGCGGGTTGGAGGCCTTGACAAGGACTTTTGCTATCTCAGCGCTTGTTGTTGGGCTAGACATACTTCT CAAGGTTGATTTTTCTTTCCGGTTTTTCTCAAACATTTCAACTTTCCTAGAACACAGCTTTATCTAA
AA sequence Show only first row Show all	>Lus10018984 pacid=23149990 polypeptide=Lus10018984 locus=Lus10018984.g ID=Lus10018984.BGIv1.0 annot-version=v1.0 MRNLGELLLPVSQVPSISLPQNPNSTFHGGAFNTPGSFNWLFHCHGFFHNVTLILASLGFVLYLAFQAKKSFTKLSNGRSHIMVAYYGSLWLVSLLNLCW SLLQALECTPGKEQTWNVLSLFTTSGMLFLEVSLIAFLLQGNYASGLEALTRTFAISALVVGLDILLKVDFSFRFFSNISTFLEHSFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27210			Protein of unknown function, t...		Lus10018984 [exp]	0	1
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10042724 [exp]	7.1	0.9151
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	7.7	0.9165
AT5G51680			hydroxyproline-rich glycoprote...		Lus10038900 [exp]	15.0	0.8960
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	18.2	0.9009
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	19.7	0.8992
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	24.6	0.9003
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	30.0	0.8921
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	30.8	0.8876
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10007278 [exp]	31.1	0.8479
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042816 [exp]	32.0	0.8963

Compare expression of checked genes

Lus10018984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.