Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05010 388 / 3e-136 Protein of unknown function, transmembrane-40 (.1) AT5G27210 379 / 1e-132 Protein of unknown function, transmembrane-40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033835 [exp] 572 / 0 AT3G05010 420 / 4e-149 Protein of unknown function, transmembrane-40 (.1) Lus10018984 [exp] 295 / 2e-101 AT5G27210 206 / 9e-67 Protein of unknown function, transmembrane-40 (.1) Lus10040523 [exp] 282 / 1e-94 AT3G05010 327 / 1e-112 Protein of unknown function, transmembrane-40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031200 [exp] 436 / 3e-155 AT3G05010 431 / 1e-153 Protein of unknown function, transmembrane-40 (.1) Potri.005G044700 [exp] 429 / 3e-152 AT3G05010 431 / 2e-153 Protein of unknown function, transmembrane-40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10160 [flax] [poplar] Tmemb_40 Predicted membrane protein
Representative CDS sequence Show only first row Show all	>Lus10018985 pacid=23149968 polypeptide=Lus10018985 locus=Lus10018985.g ID=Lus10018985.BGIv1.0 annot-version=v1.0 ATGCGCAATCTTGGGGAACTTCTTCTCCCAGTTTCTCAAGTTCCATCAATCTCGCTTCCCCAAAACCCTAATTCGACCTTCCACGGAGCGGCCTTCAATA CCCCAGGATCCTTCAATTGGCTCTTCCACTGCCACGGTTTTTTCCACAATGTCACTTTAATTCTAGCTTCCCTCGGTTTCGTCCTCTACCTCGCTTTCCA GGCCAAGAAGAGTTTCACCAAGCTCTCCAATGGCCGATCGCATATCATGGTTGCCTATTACGGGAGTCTCTGGCTCGTTAGCTTGCTCAACCTTTGTTGG TCTCTCTTGCAGGCATTAGAGTGCACCCCAGGAAAGGAACAAACTTGGAATGTGCTATCGCTGTTTACGACATCAGGAATGTTGTTCTTGGAAGTTAGCT TGATCGCCTTTTTGCTCCAAGGAAATTATGCAAGCGGGTTGGAGGCCTTGACAAGGACTTTTGCTATCTCAGCGCTTGTTGTTGGGCTAGACATACTTCT CAAGGCACTATACTTGTTCGGGTTAGGGATTCCCTTGTTCATAGACATTGATGAGCAGTCCAACGGTATGAAGTGGGGGCTTTGGGTTGTCCATCGACTA GTTCTTACTGCAGTATATGGCTCTATCCTTGTCATGTATCATTCCAAGCGGAGGGAAAGGTTGCCTGCAAGACCTGCGTTCTACAAGTACATCGTGATCA TGTTTGCATTGAATGCACTAGCGCTGTTTGCATGCGGGCTTAGCGGGAATGGATCTGGTTTCGGTTACTGGCTGTACAGCACTACCATTGTGGTCTACCA TGCCTTGTACCTCCCTCTGATATACATAACCTTTTTGGCAGACTTCTTCCAGGAAGAAGATTTGCATCTTGAGAATGTATACTACTCAGAGATGAAAGAT GCTGGTTTCTTCGATGCCGATTGGGAATAA
AA sequence Show only first row Show all	>Lus10018985 pacid=23149968 polypeptide=Lus10018985 locus=Lus10018985.g ID=Lus10018985.BGIv1.0 annot-version=v1.0 MRNLGELLLPVSQVPSISLPQNPNSTFHGAAFNTPGSFNWLFHCHGFFHNVTLILASLGFVLYLAFQAKKSFTKLSNGRSHIMVAYYGSLWLVSLLNLCW SLLQALECTPGKEQTWNVLSLFTTSGMLFLEVSLIAFLLQGNYASGLEALTRTFAISALVVGLDILLKALYLFGLGIPLFIDIDEQSNGMKWGLWVVHRL VLTAVYGSILVMYHSKRRERLPARPAFYKYIVIMFALNALALFACGLSGNGSGFGYWLYSTTIVVYHALYLPLIYITFLADFFQEEDLHLENVYYSEMKD AGFFDADWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	0	1
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	1.4	0.9159
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	2.8	0.9051
AT5G62200			Embryo-specific protein 3, (AT...		Lus10027387 [exp]	3.2	0.8839
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	3.5	0.8936
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	4.9	0.8993
AT4G39235			unknown protein		Lus10021065 [exp]	9.2	0.8685
AT1G27000			Protein of unknown function (D...		Lus10037210 [exp]	9.5	0.8671
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	9.8	0.8751
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	12.0	0.8854
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	14.5	0.8710

Compare expression of checked genes

Lus10018985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.