Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25050 136 / 2e-42 ACP4 acyl carrier protein 4 (.1.2) AT1G54580 128 / 5e-39 ACP2 acyl carrier protein 2 (.1) AT1G54630 127 / 7e-39 ACP3 acyl carrier protein 3 (.1.2) AT3G05020 123 / 4e-37 ACP1 acyl carrier protein 1 (.1) AT5G27200 121 / 3e-36 ACP5 acyl carrier protein 5 (.1) AT1G65290 54 / 5e-10 MTACP2 mitochondrial acyl carrier protein 2 (.1) AT2G44620 45 / 6e-07 MTACP1, MTACP-1 mitochondrial acyl carrier protein 1 (.1) AT5G47630 40 / 9e-05 MTACP3 mitochondrial acyl carrier protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033836 [exp] 250 / 2e-87 AT4G25050 137 / 2e-42 acyl carrier protein 4 (.1.2) Lus10038636 [exp] 136 / 2e-42 AT4G25050 134 / 3e-41 acyl carrier protein 4 (.1.2) Lus10038635 [exp] 136 / 2e-42 AT4G25050 134 / 3e-41 acyl carrier protein 4 (.1.2) Lus10037908 [exp] 136 / 3e-42 AT4G25050 132 / 8e-41 acyl carrier protein 4 (.1.2) Lus10037910 [exp] 135 / 5e-42 AT4G25050 130 / 4e-40 acyl carrier protein 4 (.1.2) Lus10020221 [exp] 53 / 1e-09 AT1G65290 183 / 4e-61 mitochondrial acyl carrier protein 2 (.1) Lus10026849 [exp] 54 / 4e-09 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10019500 [exp] 51 / 5e-09 AT2G44620 186 / 1e-62 mitochondrial acyl carrier protein 1 (.1) Lus10043348 [exp] 51 / 5e-09 AT2G44620 186 / 1e-62 mitochondrial acyl carrier protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031300 [exp] 175 / 1e-57 AT3G05020 142 / 1e-44 acyl carrier protein 1 (.1) Potri.005G044800 [exp] 172 / 2e-56 AT5G27200 146 / 5e-46 acyl carrier protein 5 (.1) Potri.015G104500 [exp] 138 / 5e-43 AT4G25050 122 / 2e-36 acyl carrier protein 4 (.1.2) Potri.012G105300 [exp] 138 / 6e-43 AT4G25050 107 / 8e-31 acyl carrier protein 4 (.1.2) Potri.006G217800 [exp] 98 / 6e-27 AT1G54630 94 / 2e-25 acyl carrier protein 3 (.1.2) Potri.013G084500 [exp] 53 / 1e-09 AT1G65290 188 / 5e-63 mitochondrial acyl carrier protein 2 (.1) Potri.019G055300 [exp] 52 / 2e-09 AT1G65290 196 / 6e-66 mitochondrial acyl carrier protein 2 (.1) Potri.014G044000 [exp] 47 / 1e-07 AT2G44620 163 / 2e-53 mitochondrial acyl carrier protein 1 (.1) Potri.006G005700 [exp] 44 / 3e-06 AT5G47630 107 / 5e-31 mitochondrial acyl carrier protein 3 (.1.2) Potri.016G006300 [exp] 43 / 6e-06 AT5G47630 111 / 1e-32 mitochondrial acyl carrier protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0314 [flax] [poplar] PP-binding PF00550 [flax] [poplar] PP-binding Phosphopantetheine attachment site
Representative CDS sequence Show only first row Show all	>Lus10018986 pacid=23149997 polypeptide=Lus10018986 locus=Lus10018986.g ID=Lus10018986.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTTCTTCTTCCTTCATCTCCCTCAACTCTCGCCCTACTCCGGGCCTGAGCAGGATCTCCGGCGTCAAATTGGCTTCAAATCAGGGAGTTG TGTCCTTTGGCCGGCGTCCAGCTCGTCTCCGGATCTCCTGCGCCGCTAAGCCTGATACGGTGGAGAAGGTATGCACCATCGTGAAGAAGCAGCTGGCGCT GTCCCCGGAGACCGTCGTGACCGGCGAATCAAAGTTCTCAGCACTTGGTGCCGATTCGCTCGACACGGTTGAAATCGTGATGGGGCTTGAAGAGGAATTC GGGATCAACGTCGAAGAGGAGAGTGCTCAGTCCATAGCCACAGTTCAAGACGCTGCTGACCTTATCGAAGACCTTGTTGAGAAGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10018986 pacid=23149997 polypeptide=Lus10018986 locus=Lus10018986.g ID=Lus10018986.BGIv1.0 annot-version=v1.0 MAAASSSFISLNSRPTPGLSRISGVKLASNQGVVSFGRRPARLRISCAAKPDTVEKVCTIVKKQLALSPETVVTGESKFSALGADSLDTVEIVMGLEEEF GINVEEESAQSIATVQDAADLIEDLVEKKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10018986 [exp]	0	1
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	1.4	0.9358
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	3.3	0.9420
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	3.5	0.9338
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	4.5	0.9297
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	7.7	0.9218
AT1G71740			unknown protein		Lus10042773 [exp]	8.5	0.9296
AT2G15730			P-loop containing nucleoside t...		Lus10021749 [exp]	10.1	0.8812
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	10.4	0.9232
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	11.1	0.9320
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	15.2	0.8995

Compare expression of checked genes

Lus10018986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.