Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22800 497 / 9e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033838 [exp] 660 / 0 AT1G22800 510 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G101700 [exp] 530 / 0 AT1G22800 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G101900 [exp] 319 / 1e-109 AT1G22800 311 / 9e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10018987 pacid=23149979 polypeptide=Lus10018987 locus=Lus10018987.g ID=Lus10018987.BGIv1.0 annot-version=v1.0 ATGAGAAGATCATTGTTCCTCTACAGAAGCGCTTCGAGGACCAGAGTTCGAACTGCAACCACCACCGGAGCAGTCCGTGATTTCCTGGCTTCCGCTTCAT TTAGCACTTACAACGACGGCGGTGGGGATGGAATACCCAGCGCTTCTAAAGTCAAAATTTTCGACCGAGAATTCAAGCGGACACAACGTGATCGTGCTGC GTGGTTGATGAATCCCAAAGATCCTCTTACCGATGCTGTTGCTGAGAATCTGCTTGATCGTTTGGAGGATTGCAAGAGGACGTTCCCCACAGCATTATGC CTGGGAGGTTCGTTGGCAGCTGTGAGACGTCAATTGCGAGGCCAAGGTTCTATTGAAAAACTCATTATGATTGACGCTTCCCATGACATGATCAAATTAT GTAAACAAGCTTGTCATGATGCTAATGATAATATTGAAACATCATTTGTGGTGGGTGATGAAGAGTTTCTACCCATGAAAGAAAGTTCACTAGATTTAGT GATCAGCTGTTTGGGGCTCCACTGGACGAATGATCTTCCTGGAGCCATGATACAGGCTAAGTTAGCACTGAAACCGGACGGCCTATTTTTGGCAGCTATT CTTGGTGGAGAAACATTGAAGGAGTTGAGAACAGCCTGCACCGTGGCTCAGATGGAGCGTGAAGGAGGCATCAGTCCTCGAATGTCGCCTTTGGCACAGG TTCGCGATGCAGGTAACCTGTTGACGAGAGCAGGGTTCACCCTCCCCGGAGTAGATGTTGATGAGTACACAGTTAAGTACCCAAGTGCTCTGGAACTGAT AGAGCATTTACGTGCAATGGGAGAAACGAATGCTCTTCTTCAGCGAAGCAATATCCTGAAGAGAGAAACAGCACTGGCAACTGCTGCAGTCTACGAGTCG ATGTTTGGAGCAGATGATGGGAGCATCCCAGCTACATTCCAGGTGATTTACATGACGGGATGGAAAGAGCATTATTCACAACAGAAGCCGAAAAAGAGGG GATCTGCCACAGTGTCTTTCCAAGACCTTCATAAGCACTTAGCTGGCGATAGTTGA
AA sequence Show only first row Show all	>Lus10018987 pacid=23149979 polypeptide=Lus10018987 locus=Lus10018987.g ID=Lus10018987.BGIv1.0 annot-version=v1.0 MRRSLFLYRSASRTRVRTATTTGAVRDFLASASFSTYNDGGGDGIPSASKVKIFDREFKRTQRDRAAWLMNPKDPLTDAVAENLLDRLEDCKRTFPTALC LGGSLAAVRRQLRGQGSIEKLIMIDASHDMIKLCKQACHDANDNIETSFVVGDEEFLPMKESSLDLVISCLGLHWTNDLPGAMIQAKLALKPDGLFLAAI LGGETLKELRTACTVAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDEYTVKYPSALELIEHLRAMGETNALLQRSNILKRETALATAAVYES MFGADDGSIPATFQVIYMTGWKEHYSQQKPKKRGSATVSFQDLHKHLAGDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	0	1
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	2.2	0.9361
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	2.4	0.9359
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	3.5	0.9268
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	4.5	0.9300
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	5.3	0.9076
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	5.7	0.9304
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	6.3	0.9152
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	7.1	0.9357
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10037076 [exp]	8.2	0.8920
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10041609 [exp]	10.8	0.9114

Compare expression of checked genes

Lus10018987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.