Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10620 285 / 1e-98 ATNUDX26 nudix hydrolase homolog 26 (.1) AT5G06340 237 / 2e-79 ATNUDX27 nudix hydrolase homolog 27 (.1) AT1G30110 202 / 2e-66 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT4G25434 47 / 3e-06 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47650 45 / 1e-05 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033839 [exp] 363 / 7e-129 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10021279 [exp] 233 / 7e-78 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10021278 [exp] 231 / 5e-77 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 227 / 2e-75 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 221 / 6e-73 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 214 / 5e-70 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10029398 [exp] 211 / 1e-68 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10003714 [exp] 195 / 1e-63 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 175 / 2e-50 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242100 [exp] 294 / 4e-102 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.008G017900 [exp] 289 / 7e-100 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.006G203700 [exp] 247 / 5e-83 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 242 / 3e-81 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.008G130100 [exp] 214 / 3e-71 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G112000 [exp] 211 / 8e-70 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.005G077500 [exp] 47 / 3e-06 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 45 / 2e-05 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 44 / 3e-05 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.018G069100 [exp] 43 / 7e-05 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10018988 pacid=23149987 polypeptide=Lus10018988 locus=Lus10018988.g ID=Lus10018988.BGIv1.0 annot-version=v1.0 ATGCTTTCCATACCAACTCTCTCCTTCGCAAGATACCCTTCCAAGCTCTACGAATTCACCAAGCTGTCACTCTTCTCTCCCTCGTTGAAGATCTCCACCA TCCCAATTCAGTCCAGAGCTTCATCAGTAGTAGCATCTTCGAGAATCTCGTTATCCATGGAGTCTCCCCCTGAAGGATACAGAAGAAACGTGGGGATCTG TCTCATCAACCCATCTAAGAAGGTATTTTCTGCGTCAAGACTGGATATACCGGACGCTTGGCAGATGCCCCAGGGTGGCATTGATGAGGGTGAAGATCCG AAAGCTGCTGCTCTCAGGGAACTAAAAGAAGAGACAGGAGTCGGCTCAGCAGAGATTCTTGCTGAGGCACCGGACTGGTTGACGTATGACTTCCCACCAC AAGTGAGGGAAAAGCTTAAAGTACAATGGGGAACTGACTGGAAAGGTCAAGCACAAAAATGGTTTCTGCTGAAATTCACAGGGAAGGAGGAGGAGGAGAT CAATCTGTTGGGAGATGGAAGCGAGAAACCAGAGTTTGGGGAGTGGTCATGGATGTCACCTGAAGAAGTAATTGATCGAGCGGTAGATTTCAAGAAGCCT GTGTACAAGCAAGTGTTGGCAGCTTTCTCCCCTCATCTTCAGTAG
AA sequence Show only first row Show all	>Lus10018988 pacid=23149987 polypeptide=Lus10018988 locus=Lus10018988.g ID=Lus10018988.BGIv1.0 annot-version=v1.0 MLSIPTLSFARYPSKLYEFTKLSLFSPSLKISTIPIQSRASSVVASSRISLSMESPPEGYRRNVGICLINPSKKVFSASRLDIPDAWQMPQGGIDEGEDP KAAALRELKEETGVGSAEILAEAPDWLTYDFPPQVREKLKVQWGTDWKGQAQKWFLLKFTGKEEEEINLLGDGSEKPEFGEWSWMSPEEVIDRAVDFKKP VYKQVLAAFSPHLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10018988 [exp]	0	1
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10036560 [exp]	15.6	0.8485
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10017822 [exp]	17.9	0.8264
AT4G13530			unknown protein		Lus10002932 [exp]	19.7	0.8415
AT1G03250			unknown protein		Lus10012370 [exp]	20.6	0.8208
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	23.6	0.8214
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	24.0	0.8103
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	25.1	0.7837
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	26.3	0.8234
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10005690 [exp]	36.3	0.7915
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	38.8	0.8001

Compare expression of checked genes

Lus10018988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.