Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05030 696 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 662 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 608 / 0 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT5G55470 507 / 1e-171 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT1G79610 151 / 1e-38 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 131 / 7e-32 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT1G14660 48 / 4e-05 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033840 [exp] 921 / 0 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10004141 [exp] 822 / 0 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 818 / 0 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 637 / 0 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 635 / 0 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10040903 [exp] 629 / 0 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 507 / 2e-171 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10014891 [exp] 365 / 3e-118 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10007786 [exp] 323 / 7e-104 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045100 [exp] 758 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 758 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 700 / 0 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.014G134900 [exp] 644 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 531 / 3e-180 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 134 / 7e-33 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10018989 pacid=23149954 polypeptide=Lus10018989 locus=Lus10018989.g ID=Lus10018989.BGIv1.0 annot-version=v1.0 ATGGGGCATCTGTTTCGCCCACACGCTGGTCAAATCATGAAGGCGGAATACTTGACTCGTTTTTGTAGAAAGGATGGAGCTGATATCAATAATTACAATT GGTGTGAACATCTTTTGGAAATCATCAAAAAATTAGGTATCGGCTCCAAAGGGTATGCTGAGGTGGACGTGAACCTTCTATTTCTGTTAGACCGCGTTAG AGTTGTTGCTGACGAATGTGTCCCTAGAGTAAGGCCTATCGTTAGGTACTGGACAAGCAGCGTACTAAAGGGCCATATCCAAGAGTTCGACCAGATTGGT GGTTTTGAAAATGGTTTCATCATCGATTGGGTTTGGGGCACCAGAGATGACGATGATGATGTTTGGTTTGTTAGTAAAGAACTGCGTATTGGGAGGGGAA AAGAGCCTCTGAAGAAGCTCGCAACACGTCAAACCAAGAAGGGTCAACTATCAACTGTTGGAGCAAGGAAATTTCCTCCGTCAACACATCCAGCAAAGAG AACCCTACCGGTTGAGAAACCGGGAAGATTTAAGGTAATTGGGAAAGGAAGCAAGAGATCAGGGCTGGGTGAAAGAGGAAGGGAGGAAGTGTTTGAAGAT GGGCTTGATGGTTTTGGTCTTTCTTTTTCAAACTTGTCGTCGACAAGGTTGGCAATTGAGCATATGAGTGCCGATGAGGTAACTGGGCAAGATGTACTAG CTGGATTGGGGGCATCTCCCATTAAAGAGGCTATGGAAGGGAATAAGAGGGCACCAAGGAAGGCAAGGGAAGTGACGATGTTTTTGTATAAGTCGCTGAT GAGGAAATCTCTAGCGGGTAAAGGTCGACCGGCTGCAAAGAAGAGGAAAACGATTACTACGGTCTGGCTCAAACTGGTGAAATATGAATCTCGTTTCAAG AGGTCTCCCTTTGATCTAAAGGAGTTGCAGAAGAAGAACAATTTGAGGGCGTTAGAAGGACAACAGTTGAAGCATGATTTTCAGGAAATCAAGCAAGTTG TGGAGGAAGTTACAGGATATCCAAACGTCCCGATTGAGATTTATAGGCCATGCACACACGAATTTCTGAAAAGAATTGAAGCGGTGGAGAATTTCCATAA CGATGGTGTGTGCACTGGGGTTGTGATTCTGCTGGTTAGTGGAGGAAAAAGCTCCCACCTATTGGTCTTCAGCGAGGATCTTTTCTTCATCTATCTCCTT CCACCTATCATTTTCAATGCCGGGTTCCAGGTGAAAAAGAAGCAATTTTTCCGGAATTTTATCACAATCATGTTGTTTGGTGCCGTTGGTACATTAATAT CTTGCTTCGTTATATCCATAGGCGCCATTCAGATCTTCAGTAGAATGGACATTGGTGAATTTGACATTGGAGACTATATAGCACTCGGAGCAATATTCGC AGCAACAGATTCCGTATGCACGTTGCAGATTCTTAATCAGGATCAGACCCCTCTACTTTACAGTCTTGTATTCGGGGAAGGTGTCGTGAACGATGCTACA TCAGTGGTGCTTTTTAATGCAATTCAGGGCTTTGATCTTGTCAATATTACTCCACACATTGGTTTGGAGTTTATTGGCAACTTCTTCTATTTGTTTATCA CTAGTACTTTATTAGGAGCTGCGACTGGATTGGTCAGTGCTTACATCATCAGAAAGCTCTACTTTGGAAGGCATTCAACGGATAGGGAGGTTGCTCTCAT GATTCTTATGGCATACCTTTCATATATGCTGGCTGAGCTATTCTACTTGAGTGGGATTCTCACAGTATTCTTTTGTGGAATTGTGATGTCCCATTATACT TGGCACAATGTGACTGAGAGCTCAAGAGTAACAACAAAGTATGCATGCATTTGCAACGTTGTCGTTTGTTTTGCAACCTTGTCGTTTGTCTCTGAGATAT TCATCTTTCTATACGTCGGAATGGATGCCTTGGACATTGAGAAGTGGCACGCTGTGAGCGACAGCCCTGGAACATCAGTTGCAGTGAGTTCAATATTGTT AGCCCTTCTTCTGCTTGGAAGAGCAGCTTTTGTTTTCCCCTTGTCCTTTTTATCCAACTTGTCCAAGAAATCACCTAACGATAAGATCGACATCAAGCAG CAAATTGTCATATGGTGGGCTGGCTTAATGAGAGGTGCTGTGTCAATGGCACTTGCATATAACAAGTTTACGAGTGGAGGGCACACTCAATTGCGGGAGA ATGCTATACTGATCACCAGCACCATAATTGTTGTTCTTTTCAGCACAGTGGTGTTTGGTTTGATGACTCAACCTCTTATAAGATTTCTACTGCCAACTGG GCCGAGAAGTCAGACAAGCACGGCCGTTTCTTCACACGACGGGACCCCAAAGTCGATCACAGTTCCACTCCTGGGCGAGGGACAGGACTCGTTGGACGAT CTGGCTAACCAACACCTCAACGGTGGGTACAGGTTACGTGCCTTGTTGACCACGCCAACGCACACTGTGCATTACTACTGGCGTAAGTTTGACAATGCGT TCATGAGACCAGTGTTTGGTGGCCGAGGGTTCGTTCCTTTTGTTCCTGGATCTCCAACGGAACGGAGTTTGCCAGAAAATGAAAATCCATTTCTGTGA
AA sequence Show only first row Show all	>Lus10018989 pacid=23149954 polypeptide=Lus10018989 locus=Lus10018989.g ID=Lus10018989.BGIv1.0 annot-version=v1.0 MGHLFRPHAGQIMKAEYLTRFCRKDGADINNYNWCEHLLEIIKKLGIGSKGYAEVDVNLLFLLDRVRVVADECVPRVRPIVRYWTSSVLKGHIQEFDQIG GFENGFIIDWVWGTRDDDDDVWFVSKELRIGRGKEPLKKLATRQTKKGQLSTVGARKFPPSTHPAKRTLPVEKPGRFKVIGKGSKRSGLGERGREEVFED GLDGFGLSFSNLSSTRLAIEHMSADEVTGQDVLAGLGASPIKEAMEGNKRAPRKAREVTMFLYKSLMRKSLAGKGRPAAKKRKTITTVWLKLVKYESRFK RSPFDLKELQKKNNLRALEGQQLKHDFQEIKQVVEEVTGYPNVPIEIYRPCTHEFLKRIEAVENFHNDGVCTGVVILLVSGGKSSHLLVFSEDLFFIYLL PPIIFNAGFQVKKKQFFRNFITIMLFGAVGTLISCFVISIGAIQIFSRMDIGEFDIGDYIALGAIFAATDSVCTLQILNQDQTPLLYSLVFGEGVVNDAT SVVLFNAIQGFDLVNITPHIGLEFIGNFFYLFITSTLLGAATGLVSAYIIRKLYFGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYT WHNVTESSRVTTKYACICNVVVCFATLSFVSEIFIFLYVGMDALDIEKWHAVSDSPGTSVAVSSILLALLLLGRAAFVFPLSFLSNLSKKSPNDKIDIKQ QIVIWWAGLMRGAVSMALAYNKFTSGGHTQLRENAILITSTIIVVLFSTVVFGLMTQPLIRFLLPTGPRSQTSTAVSSHDGTPKSITVPLLGEGQDSLDD LANQHLNGGYRLRALLTTPTHTVHYYWRKFDNAFMRPVFGGRGFVPFVPGSPTERSLPENENPFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10018989 [exp]	0	1
AT5G67490			unknown protein		Lus10019019 [exp]	7.7	0.7570
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	8.2	0.8010
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10012318 [exp]	18.0	0.7699
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	25.3	0.7586
AT1G75580			SAUR-like auxin-responsive pro...		Lus10024326 [exp]	28.0	0.7120
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	33.8	0.7544
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10016738 [exp]	35.5	0.7197
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026814 [exp]	41.7	0.7192
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Lus10041018 [exp]	41.8	0.7528
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10007625 [exp]	43.4	0.7490

Compare expression of checked genes

Lus10018989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.