Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018990 pacid=23149976 polypeptide=Lus10018990 locus=Lus10018990.g ID=Lus10018990.BGIv1.0 annot-version=v1.0 ATGGACTCCGTGCTGAAGGATTTGGTTGCCATCAAGATCAAGTTAGCCGCTTTGAAAGAAGCTCAAGATGCATCGCTGGAGGAAATAAAACAAGTTAATG CGATTATGTCTAGATTGGTTACTGATTTGTGGTTTGTTGTTGGTGTTTGTAACTACAACTATAGGTTTGTTTGTGGCCGTTGTTTTTGGCTCTTCATCTG CCAAACGTATATAGAGAGGCACCCAGACAAACGAACAGCGAAGAAAGGAAGCGCCATACCTTTTCGAATGTTATCGACGGTGTACAGGGAAAAGGAGGCG GGGACGATCGACTGCTGCAATCTACGGAAATCGAGGACTGGTTCGGGAACCCTAACCGTCGCCGATTTAAACTCTCGTGGATCTGGATTCGTGTCACATG CTCGACGGCGGAAGTTTGCTGGATTCGAGAGAAAGATTGAAGAGATTTTTTTTCGATCTGGGGTTTATTACAGAGAGATTGAGTTTCAGCAAACGAGTCG AGGAAATATCGGGTCGAGAGAGAGTGAAGAGATAACAAACAGAGGCCACGTCAACTCCACCATTGAATTCGCTAGCTCCCCCTCCGCTGCTTCCTCATCG TCACAATCACCATCGCCTCCCCAGACACCCACCGCTGTCGACGACGGACGACGAAGCCGAATCAATCTTCGTCGTCCTCCCTTCCATCACTTTCCTCCGC CTCATCGTCGTCGTGTTCTTTTAACTTCCGACGAACTCATACTACAACCTCCGCGACGATCTGGCCGGATCCAAGAGTCTGTTGATAGAATTAGCAGCAT CGACGGCGACGATGGGGAAGGGGGAGAAGAAAGAGATGCGTAG
AA sequence Show only first row Show all	>Lus10018990 pacid=23149976 polypeptide=Lus10018990 locus=Lus10018990.g ID=Lus10018990.BGIv1.0 annot-version=v1.0 MDSVLKDLVAIKIKLAALKEAQDASLEEIKQVNAIMSRLVTDLWFVVGVCNYNYRFVCGRCFWLFICQTYIERHPDKRTAKKGSAIPFRMLSTVYREKEA GTIDCCNLRKSRTGSGTLTVADLNSRGSGFVSHARRRKFAGFERKIEEIFFRSGVYYREIEFQQTSRGNIGSRESEEITNRGHVNSTIEFASSPSAASSS SQSPSPPQTPTAVDDGRRSRINLRRPPFHHFPPPHRRRVLLTSDELILQPPRRSGRIQESVDRISSIDGDDGEGGEERDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018990 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10005174 [exp]	2.0	0.8401
					Lus10033476 [exp]	7.7	0.8382
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	9.0	0.8382
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	9.2	0.8074
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	12.8	0.8378
AT3G50780			unknown protein		Lus10016789 [exp]	14.1	0.7756
AT3G09860			unknown protein		Lus10001400 [exp]	15.0	0.8206
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	15.9	0.8004
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	16.1	0.8151
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	17.7	0.8156

Compare expression of checked genes

Lus10018990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.