Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34970 859 / 0 Trimeric LpxA-like enzyme (.1) AT4G18300 778 / 0 Trimeric LpxA-like enzyme (.1) AT3G02270 685 / 0 Trimeric LpxA-like enzyme (.1) AT5G19485 66 / 4e-11 transferases;nucleotidyltransferases (.1) AT2G04650 54 / 3e-07 ADP-glucose pyrophosphorylase family protein (.1) AT2G39770 53 / 4e-07 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 49 / 5e-06 Glucose-1-phosphate adenylyltransferase family protein (.1) AT5G36230 49 / 9e-06 ARM repeat superfamily protein (.1) AT1G65220 48 / 2e-05 ARM repeat superfamily protein (.1) AT5G48300 45 / 0.0002 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033841 [exp] 1339 / 0 AT2G34970 880 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10036081 [exp] 66 / 5e-11 AT5G19485 638 / 0.0 transferases;nucleotidyltransferases (.1) Lus10026802 [exp] 66 / 6e-11 AT5G19485 633 / 0.0 transferases;nucleotidyltransferases (.1) Lus10024356 [exp] 56 / 4e-08 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10004699 [exp] 54 / 2e-07 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 54 / 2e-07 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10029667 [exp] 52 / 4e-07 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10030156 [exp] 51 / 1e-06 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10018182 [exp] 52 / 2e-06 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045200 [exp] 988 / 0 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.009G066400 [exp] 73 / 2e-13 AT5G19485 655 / 0.0 transferases;nucleotidyltransferases (.1) Potri.001G271800 [exp] 59 / 9e-09 AT5G19485 630 / 0.0 transferases;nucleotidyltransferases (.1) Potri.006G090300 [exp] 56 / 5e-08 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 54 / 1e-07 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 53 / 3e-07 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 51 / 2e-06 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 51 / 2e-06 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.013G085600 [exp] 50 / 3e-06 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.019G053600 [exp] 50 / 5e-06 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase CL0020 [flax] [poplar] TPR PF02020 [flax] [poplar] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Lus10018991 pacid=23149956 polypeptide=Lus10018991 locus=Lus10018991.g ID=Lus10018991.BGIv1.0 annot-version=v1.0 ATGGGAGCGCAGAAGAAAGGATCACATAGGGTCACAGAAGAGCCGGAAGAATTGGCTCGTAGTTCACTCCAGGCCATTCTTTTGGCCGATAGCTTCACTA CAAAATTCCGCCCCATTACTCTCGAGCGCCCTAAGGTTCTTTTGCCGTTGGTAAATGTTCCGATGATAGATTACACTCTTTCTTGGCTGGAATGGGCTGG GGTAGAGGAGGTTTTTGTATTCTGCTGCGCCCATTCTGGGCAAGTCAAGGATTATTTGGACAACTCTGAATGGCGCAATCAGCCTAACTTCACTGTCACC ACTATCGAATCTAACAATTCTATCAGCGCTGGAGATGCTCTGAGGTTTATATATGAGCGCAATGTGATACACGGGGACTTTGTCCTAGTCAGTGGGGATA CGGTGAGCAACATGCCATTGGCCCAAGCAGTTAAAGAACATAAGGATAGAAGAAAGAAGGACAGCAATGCAGTCATGACCATGGTTATAAAAAAATCACA GCCTTCGCCAATTATCCACCAGTCACGTCTTGGTACTGATGAGCTGTTCATGGCCGTCGATCCTGATACCAAGCAACTTCTCTATTACGAGGACAGAGAA GAGCACCTAAAAGATTGCTACATAGATATATGCTCCCAAGAGGTGCTGAGTTTGTTTACTGACAATTTCGACTATCAACATCTGCGGCGTCATTTTGTGA AAGGCTTGCTAGTTGATGATATAATGGGTTACAAAATATTTACTCATGAAATTCACTCTAGCTATGCGGCTAGGATTGATAACTATAAGAGCTATGACAC GATCAGTAAGGATATCATTCAGAGGTGGACATATCCGTTTGTGCCAGATGTTAATTTTTCAGGAAATTGCAATGCTAAACTTGAAAGAGAGGGGATGTAC CGAGAACCAGGGACCAAAATTGGGGACAATTCAAGTGTTACTCATTCTGTCATTGGAGAAGGATGTACTATTGGATCTAATGTTTCCGTAGTGGGATCAT TCATATGGAACAATGTTACCATAGAGGATGGGTGTAACGTACAAAATGCAATAGTATGTGATGGCGTGATCATAAAAGAAGGTGCAACTTTGGAACCTGG TGTTGTTTTGTCTTTCAAGGTTGTCATTGGACGAGATTTTGTTGTCCCTGCCTACTCGAAAGTGTCTCTGTTTCAGCAGCCAACTGTGGAAGATAGTGAT GAAGAATTGGAGTATGCTGATAACAGCAGTGGAGCTATAGATCCATCCTTTGTCGATCTTAGTGACAACTTGAATGAGGAGATACTATCTGAAGCATCTC AGACAAAGCATTGGCCCAGTTCACAGCTTGGGCCTGGTGGGGCTGGTTATGTTTGGTCGACCTGCGATGGAGGTTACGATGAAGAGTGGAAGCAGTCTGT TGCACCAATTCCGGCACAGAAACTCTCCGAGGCATTGCTAGCCATTGATGAGGATTTGGAGACCTTAAATGTTGATGACAGTGCTCTAGCAGTTTCTGGA GAGCTAGAACCTGGCACCTCTGGCAATGAATCTGACGATGATGAAAACAAGGACGACTCTTTTTATTTTGAGCAAGAGGCTGAAGCAACCTTCTTGAGAG CTGTTAATGACAATATTGCAGTCAAGGACTTAGTCCTTGAAATGAACTCACTACGGTTATCATATAACATGACTTCTGCTGACTGCACTGGAGCCTTATT TTATGCAATGATGAAACAGGCTTTGGAATCTCCACACACCACAGCTGATGAGTTGTGGAAGAATGTTGCTAATGTTACGAGCAAATGGGAGAAACTACTC AAAACTTACGCTAAAGAAATAGATGAGCAGATTGAGCTGATAATGAAACTAGAAGATACATGTCATGAATCCCCCGAGTTGTCACCAATTTTTTCTCGGA TTCTGAGACATTTATATGAGGAAGAGATCGTAGAAGAGGATGCTATATTGAAGTGGGACGACGAGCGGAAGGATGCAGATGAATCGGACAGGATTTTCGT CAAACAGGCAGCAGTGTTTGTTAAAGTAAGATACCACCACCTTTAA
AA sequence Show only first row Show all	>Lus10018991 pacid=23149956 polypeptide=Lus10018991 locus=Lus10018991.g ID=Lus10018991.BGIv1.0 annot-version=v1.0 MGAQKKGSHRVTEEPEELARSSLQAILLADSFTTKFRPITLERPKVLLPLVNVPMIDYTLSWLEWAGVEEVFVFCCAHSGQVKDYLDNSEWRNQPNFTVT TIESNNSISAGDALRFIYERNVIHGDFVLVSGDTVSNMPLAQAVKEHKDRRKKDSNAVMTMVIKKSQPSPIIHQSRLGTDELFMAVDPDTKQLLYYEDRE EHLKDCYIDICSQEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIHSSYAARIDNYKSYDTISKDIIQRWTYPFVPDVNFSGNCNAKLEREGMY REPGTKIGDNSSVTHSVIGEGCTIGSNVSVVGSFIWNNVTIEDGCNVQNAIVCDGVIIKEGATLEPGVVLSFKVVIGRDFVVPAYSKVSLFQQPTVEDSD EELEYADNSSGAIDPSFVDLSDNLNEEILSEASQTKHWPSSQLGPGGAGYVWSTCDGGYDEEWKQSVAPIPAQKLSEALLAIDEDLETLNVDDSALAVSG ELEPGTSGNESDDDENKDDSFYFEQEAEATFLRAVNDNIAVKDLVLEMNSLRLSYNMTSADCTGALFYAMMKQALESPHTTADELWKNVANVTSKWEKLL KTYAKEIDEQIELIMKLEDTCHESPELSPIFSRILRHLYEEEIVEEDAILKWDDERKDADESDRIFVKQAAVFVKVRYHHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10018991 [exp]	0	1
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	6.0	0.8250
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	8.9	0.8406
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003433 [exp]	10.6	0.8198
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Lus10002718 [exp]	11.3	0.8068
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	11.4	0.8528
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10003036 [exp]	12.0	0.8292
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10026452 [exp]	19.3	0.8398
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Lus10014835 [exp]	20.2	0.8406
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	20.2	0.8168
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	21.9	0.8196

Compare expression of checked genes

Lus10018991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.