Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 417 / 9e-142 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT3G20660 67 / 1e-11 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G16370 67 / 2e-11 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G73220 57 / 2e-08 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G79410 56 / 6e-08 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT3G18830 52 / 7e-07 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT1G79360 52 / 9e-07 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT2G16120 52 / 1e-06 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 51 / 1e-06 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 51 / 2e-06 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027577 [exp] 493 / 4e-171 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 479 / 5e-166 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 418 / 4e-142 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 425 / 3e-139 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 369 / 5e-123 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 323 / 2e-107 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 281 / 2e-89 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 266 / 8e-84 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10011995 [exp] 84 / 6e-18 ND 96 / 2e-22
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150700 [exp] 488 / 1e-169 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 455 / 1e-155 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003100 [exp] 452 / 3e-155 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 447 / 2e-153 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 363 / 1e-118 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.011G130533 [exp] 69 / 3e-12 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.010G174300 [exp] 60 / 2e-09 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.009G113600 [exp] 58 / 1e-08 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 55 / 8e-08 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 55 / 9e-08 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10018992 pacid=23149992 polypeptide=Lus10018992 locus=Lus10018992.g ID=Lus10018992.BGIv1.0 annot-version=v1.0 ATGGCGACGACGATGGAAGATCATCACCAAACCCCTCGCCGTGAACCCGAATCAAGCTACACAGTGGAGGAGGCGCTGACCGCCGCTGGATTCGGCAAGT TCCAGCTCCTCCTGCTGGCATACGCAGGGATGGGTTCCTTCGCCGAAGCCATGGAAATGATGATCCTCTCATTTGTGGGTCCTGCTCTCAAGTCACAGTG GGACCTTTCTTCCAGCCAAGAGAGCCTCTTGACCACCGTCGTCTTCGCCGGAATGAAGGGTTTGCTTGGGATTACTGTGATTACTAGTGGAGCTGGAATC CTGAGCACATTTGCTCCTAATTATACATCTCTGTTGATTCTTCGTTGCATGGTTGGGGTTGGCGTTTCTGGTGGCTCGCTTTTCCTGTCATGGTTTCTTG AGTTTGTACCTGCTTCTCATCGTGGATTGTGGCTGGTTGTATTCTCTGCTTTCTGGACCTTTGGAACCATCTTCGAGGCTGCACTTGCCTGGGCTGTAAT GCCAAGGTTGGGTTGGAGATGGCTTCTTGCCTTCTCTTCAATCCCTTCAACTGGACTGCTTCTCTTTTACTGTCTAGTTCCTGAGTCTCCGAGGTACTTA TGCGTTAAAGGAAGGACGAAAGAAGCAAACGACATCTTGAAGAAGATAGCTCTCACCAATTGCAAATCCCTCCCTGCTGGCTTCCTTGTTCCTGACAATA TGAAGAATAGCGAATTGCATTCAACGGGAACTATGGCTGAAGAAGATCCTGATCATGTAGTAGTAGTCCCGTCATCATCCACTTCAGAAGAGGTCGTCAC CGTTCCACTCCTCCCATCACCTGAAAAGCTGACGGCTTTGAACAGACTACCAGGATTCGCTTCCTTCTTTAGGCTATTTTCAAAGAGGCTAATACGGACG ACAGTGCTGTTATGGTTGTTGTACTTTGGGAACTCGTTTTCATATTACGGAATCATATTACTCACCTCGGAGTTGAGCAACTGGCAGTCCAGATGCAGCA GCTCAAGGTCTCTGCTTGCTGAAGTCCCTCAGAGTACTGGCAACAACCTCTATGTAGATACATTCATCACTAGCTTGGCAGAGCTACCGGGGCTAATTCT ATCAGCAGTAATAGTGGACAGATTCGGTCGCAAGCTCTCAATGGCATTCATGTTTTTCCTAGGCTTCATCTTCCTGATACCTCTACTTTCCTCTCAATCT CCAGTCTTAACCACAGCAGTACTGTTCGGTGCACGGATGTGTATCTCAGGAACCTTCACAGTTGCTTGCATATTTGCCCCCGAGTTATATCCAACTTCTG TGAGGGCAACCGGGGCAGGAGTTGCGAGCTCCATCGGAAGGATCGGAGGGATGGTTTGCCCTCTAGTAGCGGTCGGATTGGTCACTGGTTGCCATCTTAT GGAAGCAGTTATTCTGTTTGAGATTATACTAGCGGTTACTGCCATTTGCTGTCTGCTGTTTCCAATGGATACAAAGGGGCTTCAGTTGAGAGATAATGAT GACACCTAG
AA sequence Show only first row Show all	>Lus10018992 pacid=23149992 polypeptide=Lus10018992 locus=Lus10018992.g ID=Lus10018992.BGIv1.0 annot-version=v1.0 MATTMEDHHQTPRREPESSYTVEEALTAAGFGKFQLLLLAYAGMGSFAEAMEMMILSFVGPALKSQWDLSSSQESLLTTVVFAGMKGLLGITVITSGAGI LSTFAPNYTSLLILRCMVGVGVSGGSLFLSWFLEFVPASHRGLWLVVFSAFWTFGTIFEAALAWAVMPRLGWRWLLAFSSIPSTGLLLFYCLVPESPRYL CVKGRTKEANDILKKIALTNCKSLPAGFLVPDNMKNSELHSTGTMAEEDPDHVVVVPSSSTSEEVVTVPLLPSPEKLTALNRLPGFASFFRLFSKRLIRT TVLLWLLYFGNSFSYYGIILLTSELSNWQSRCSSSRSLLAEVPQSTGNNLYVDTFITSLAELPGLILSAVIVDRFGRKLSMAFMFFLGFIFLIPLLSSQS PVLTTAVLFGARMCISGTFTVACIFAPELYPTSVRATGAGVASSIGRIGGMVCPLVAVGLVTGCHLMEAVILFEIILAVTAICCLLFPMDTKGLQLRDND DT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	0	1
AT3G11810			unknown protein		Lus10037134 [exp]	1.4	0.9394
AT5G49710			unknown protein		Lus10015965 [exp]	3.7	0.9522
AT5G65500			U-box domain-containing protei...		Lus10025715 [exp]	5.2	0.9326
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	6.6	0.9252
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10030760 [exp]	7.0	0.9345
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	8.3	0.9391
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	8.8	0.9374
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10019615 [exp]	11.0	0.9297
AT4G39870			TLD-domain containing nucleola...		Lus10041697 [exp]	11.0	0.9316
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	12.0	0.9239

Compare expression of checked genes

Lus10018992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.