Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07900 133 / 6e-40 AS2 LBD1 LOB domain-containing protein 1 (.1) AT3G26660 130 / 9e-40 AS2 LBD24 LOB domain-containing protein 24 (.1) AT3G26620 130 / 9e-40 AS2 LBD23 LOB domain-containing protein 23 (.1) AT2G28500 132 / 5e-39 AS2 LBD11 LOB domain-containing protein 11 (.1) AT2G30130 126 / 3e-37 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT5G63090 122 / 8e-36 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G23660 124 / 3e-35 AS2 LBD10 LOB domain-containing protein 10 (.1.2) AT5G66870 124 / 4e-35 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT1G31320 120 / 5e-35 AS2 LBD4 LOB domain-containing protein 4 (.1) AT2G30340 122 / 1e-34 AS2 LBD13 LOB domain-containing protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033843 [exp] 275 / 3e-96 AT1G07900 143 / 8e-44 LOB domain-containing protein 1 (.1) Lus10040313 [exp] 154 / 2e-48 AT5G66870 133 / 5e-40 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10023434 [exp] 153 / 3e-48 AT3G26660 131 / 5e-40 LOB domain-containing protein 24 (.1) Lus10040373 [exp] 132 / 6e-39 AT2G28500 211 / 7e-69 LOB domain-containing protein 11 (.1) Lus10011645 [exp] 130 / 2e-38 AT2G28500 205 / 4e-67 LOB domain-containing protein 11 (.1) Lus10036130 [exp] 130 / 5e-38 AT2G28500 207 / 1e-67 LOB domain-containing protein 11 (.1) Lus10031285 [exp] 125 / 5e-37 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10007525 [exp] 125 / 5e-37 AT2G30130 204 / 1e-67 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10040638 [exp] 125 / 6e-37 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250700 [exp] 150 / 4e-47 AT2G30130 111 / 2e-31 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.007G066700 [exp] 130 / 2e-39 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.015G135900 [exp] 130 / 3e-39 AT3G26660 165 / 2e-53 LOB domain-containing protein 24 (.1) Potri.005G097800 [exp] 129 / 9e-39 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 127 / 6e-38 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 126 / 1e-37 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.008G043900 [exp] 127 / 2e-37 AT1G07900 218 / 2e-72 LOB domain-containing protein 1 (.1) Potri.010G217700 [exp] 127 / 3e-37 AT1G07900 203 / 1e-66 LOB domain-containing protein 1 (.1) Potri.013G081200 [exp] 125 / 1e-36 AT2G40470 249 / 2e-84 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.010G184400 [exp] 124 / 2e-36 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10018993 pacid=23149965 polypeptide=Lus10018993 locus=Lus10018993.g ID=Lus10018993.BGIv1.0 annot-version=v1.0 ATGTCGAGCAGCAACAGTCAACAACAAGAGAATCCAAGGAGAAGATGCGCAGGTTGCAAATTCCTTAGAAGAAGATGCGCCCAAGATTGCATCTTGGTTC CTTATTTCCCACCCACAAATCCCCAGAGATTCGCTTTTGCCCACAAGGTTTTCGGTGCCAGCAATGTCACCAAGCTCTTACAAGCAGTGCCAGAGGAGTT GAGAGGGAAAGCAGCGGACAGCATATCCTACGAGGCAACCTTACGTGTCAAAGACCCAGTTTACGGATGCGCCGGCATCATCTACCAGCTTGAGAAGCAG ATCAGGGAAGTTGAATCTGAGATGGCCATTGTCAACTCAAGACTTGCTTTTTACACTGCCCAATACCAGCAACAGCAGCAGATAGATGCTGCAGAATTTG ACAGGGATGCCGATTTGATGCTATGGCCTGCTTTAACGGTTCAAGATATACAACACAACTCAATTGATCCTTATTTCTTGTACTGA
AA sequence Show only first row Show all	>Lus10018993 pacid=23149965 polypeptide=Lus10018993 locus=Lus10018993.g ID=Lus10018993.BGIv1.0 annot-version=v1.0 MSSSNSQQQENPRRRCAGCKFLRRRCAQDCILVPYFPPTNPQRFAFAHKVFGASNVTKLLQAVPEELRGKAADSISYEATLRVKDPVYGCAGIIYQLEKQ IREVESEMAIVNSRLAFYTAQYQQQQQIDAAEFDRDADLMLWPALTVQDIQHNSIDPYFLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10018993 [exp]	0	1
					Lus10003863 [exp]	2.4	0.8049
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013583 [exp]	5.5	0.7733
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039533 [exp]	7.3	0.7670
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030086 [exp]	8.1	0.7336
					Lus10017216 [exp]	13.4	0.7154
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	18.1	0.7770
					Lus10004778 [exp]	35.4	0.7727
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	38.2	0.7214
AT5G45180			Flavin-binding monooxygenase f...		Lus10023942 [exp]	40.2	0.6955
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10005589 [exp]	42.9	0.7422

Compare expression of checked genes

Lus10018993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.