Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05040 1473 / 0 HST1, HST HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033845 [exp] 2178 / 0 AT3G05040 1578 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10004145 [exp] 1711 / 0 AT3G05040 1460 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10001714 [exp] 1699 / 0 AT3G05040 1465 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032100 [exp] 1719 / 0 AT3G05040 1513 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10018994 pacid=23149969 polypeptide=Lus10018994 locus=Lus10018994.g ID=Lus10018994.BGIv1.0 annot-version=v1.0 ATGGAAGAGGCAAATAGCAGTTTGGGTATAGCAAACAATGTGGCTCTTGCCATCGTTGCAGCTCTCGACTGGAACTCCACTCCAGATGCTCGCAAAGCTG CTGTTTCTTTCCTTGATTCTGTTAAAACCGGAGATGTAGGAGTGTTGGCAAGCACATCAGTACTTCTTGTTAAAAGGGATTGGTCTTCCGAAATTCGGTT GCAAGCTTACAAGATGTTGCAGCATTTAGTCCGGTTGCGTTGGGAAGAACTCAGCCCAATAGAGCGTAAAAACTTTGCGAATGTAGCTGTTGAATTTATG TCTGAAATGACAAACCCCAGTGAAGAATGGCCATTAAAGAGTCAAAAAGCTGCACTTGTTGCTGAGATTGTTAGAAGAGAAGGGATAGAACTTTGGCAGG AACTGCTTCCATCTTTGATTTCCCTGTCCAACCAAGGTCCTGTGCAGGCTGAGTTGGTTTCAATGATGTTGAGGTGGCTCCCTGAAGACATTACCATTCA CAATGAAGATCTGGAAGGTGATCGACGTCGCCTATTATTAAGGGGCCTTACCCAGTCTTTACCAGAAATTTTGCCATTGCTATACACACTACTGGAAAGG CACTTTGGAGCTGCATTTAGTGAAGCGAGTAGGCAACAACTGGATGTAGCGAAAGAGCATGCTGCAACTGTAACAGCTACTTTGAATGCGATTAATGCAT ACGCTGACTGGGCTCCTTTGCCTGATCTAGCTAAATTTGGCATAATTCATGGGTGTGGCTTTTTGCTTTCAGCCGTTGATTTCCGTCTTCATGCTTGTGA ATTTTTCAAACTTATCTCCTCAAGGAAAAGAACAATTGATGCTTCGGTTTCAGAATTTGATTCGGCAATAAGTAGTATCTTTCAGATTTTAATGAATGTA TCTGGAGACTTTCTATACAAGTCTTCCTCAACTGCTGCTGCTGTGGACGAGAATGAAATTGAGTTTGTTGAATATATATGTGAAAGCATGGTTTCTTTGG GGTCTACTAATTTACGATGCATTAGTGGAAACAGTTCCATACTATCTATTTATTTACAACAGATGCTGGGCTTTTTCCAACATTATAAACTTGGTCTGCA TTATCAGTCCCTGCTCTTTTGGCTGGCGCTAATGAGGGATTTAGTTTCGAAGTCTAAAGTTACATCAGCTGCATCTGGAGTTGGTTCTGGTTCTGCTCAG CTTGACAATGAGAAACTAATAATTTTGAATCTTGTAGATGATAATATTTGTAGATCAATACTAGATACCTCTTCCCAGCGTATGCTCAGGAAAGAGAAAG CATTTCCAGGGGCTGCCTTTGCTCTAGGTACCTTGGAGTTATGGAGTGATGATGTTGAAGGGAAGGGAGACTTTGGCCAGTACCGATCCAAGCTGTTGGA ACTAATGAGGCTCATGGCATCTTTCAAGCCTATAATAGCTAGTAGTAAAATATCTGACAGAATTATTTCAGGAATTAACAGCCCCCTGACTTCGCCTGTG CCGGTTCAGGACCTAGCTGTGATGGAGAGCCTTCAGGTTTCTCTAGAAAATATAGTTAATGTTGTATTTGATGGATCAAATGAACTTGCTGGGGGTAGTT CCGAACTTCATCTTGCAGTATGCAGAATATTTGAAGGTTTGCTTCAGCGGCTTCTTTCTCTAAAATGGATGGAGCCAACTCTTGTCGAAATCCTAGGACA CTATTTAGATGCATTGGGCCCTTTTCTGAAGTACTTTCCCGGCGCAGTTGGTGGTGTCATCAATAAACTATTTGAGCTTCTAACATCCCTTCCTCTTGTT GTTGAGAACCCCTCAATAACTGATGCGCGGCGTGCAAGGTTACAGATCTGCATGTCATTCATACGAATAGCAAAAGCTTCTGATAAAAGCATTTTGCCCC ACATGAAGGGTATAGCAGATACCATGGGTCATATGCAAAGAGAGGGTTGTTTGCTTCGCAGTGAGCACAATCTTCTGGGAGAAGCATTCCTTGTCATGGC TTCTGCTGCTGGGCTTCAACAACAACACGAGGTTTTGAACTGGTTACTTGAACCTTTGAGCCAGCAGTGGATACAGTTGGATTGGCAGAATAAATATTTG TCTGAACCACTAGGTGTCGTTCGGTTGTTCTTGGACACACCTTTAATGTGGTCAATTTTTCACACAGTGACGTTTTTCGAGAAGGCACTTAAAAGGAGTG GATTCAAAAAGAGTAATTTATACACACAAAATAGCTCTTCGACAAATCCCCCTATGCATCCATTGAGTTCTCATCTAGCTTGGATGTTGCCTCCTCTCCT AAAACTGCTCCGTGCTTTGCATGCCCTTTGGTCTCCATCTCTATCTCAAATGTTACCTGCAGAGGTGAAAGCTGCCATGCTGATTACTGATGCTGAGAAA TATAGTCTTCTTGGGGAAGGAAACCCGAAATTGTCAAAGAACATTCTGACTTCCACAGATAGTTCTCAAACTAACAATAGCAAGGAAGGACATGCAGAGA TAAATCAAGGTGATGCAAGAAATTGGTTAAAAGGAATCAGAGACAGTGGTTACAATGTATTGGGCCTGGCCACAACCATCGGAGATCCATTTTTCAAATG CTTAGATGCAGATTCAGTTGCATTGGCACTGATGGAGAACGTACAGTCACTTGAGTTCAGACATCTGAGACAGCTTATTCATTCAGTCTTGGTCCATTTG ATTAAATTTTGTCCCCAAGAACTATGGGAGGTCTGGCTGGAGAAGCTTTTGCACCCGTTGTTTGTCCACATACATCAGGTTCTTAGCTTCTCTTGGTCCA GTCTTTTGCATGAAGGAAGAGCAAAGGCTCCTGATGTACAAGGAATCGTTGCTGGGTCAGACCTAAAAGTGGAAGTAATGGAAGAGAAACTGCTCCGAGA TTTAACCCGTGAGATGTGCACATTTCTATCAGTCATGGCGTCACCTGGACTAAACAATGGGCTTCCAACTCTAGAACAATCTGGGCATATTAACCGTGTG GATACATCTTCTCTAAAAGACTTGGATGCATTTCTCTCCAAGTCTATGGTTGCTTTCATTTTGATGCACAGTAGCTTGGCGCTTCCAGCATTGCAGATAT GTTTAGAAGCTTTCACATGGACTGATGGTGAATCTATGACGAAAGTTTCTTCTTTTTGTGCTGCTGTGGTTGTTCTAGCCATCTCAACAAGAAATCTTGA GCTCCAACAGTTTGTCTGTACGGATCTTTTTTCTGCAGCGATCAAAGGTTTGGCACTTGAGTCGAATGCCATAATCAGTGCAGATTTGGTCAGTCTGTGT CGTGAAATATTCATCTATCTTTGTGACAGAGACCCTGCTCCTAGGCAGGCAAGTGATCAGGCCTTGGTTCTACTCTCTCTTCCTTGCATTTCGCCCCATG ATTTGGCTGCTTTTGAGGAAGCTTTGACAAAGACATCTAGTCCAAAGGAACAAAAGCAGCACATGAGGAGCTTGCTCATGTTAGCTAGTGGAAATAAGTT GAAGGCACTTGCTGCCCAAAAAAGTGTAAATATCATCACAAACGTTACAGCAAGGCATCGCAGCTCAGCTACTGCCTCGGAAACTAGAATTGAGGATGGG GAACCCGTGGGTCTGGAAGCTATCATGTGA
AA sequence Show only first row Show all	>Lus10018994 pacid=23149969 polypeptide=Lus10018994 locus=Lus10018994.g ID=Lus10018994.BGIv1.0 annot-version=v1.0 MEEANSSLGIANNVALAIVAALDWNSTPDARKAAVSFLDSVKTGDVGVLASTSVLLVKRDWSSEIRLQAYKMLQHLVRLRWEELSPIERKNFANVAVEFM SEMTNPSEEWPLKSQKAALVAEIVRREGIELWQELLPSLISLSNQGPVQAELVSMMLRWLPEDITIHNEDLEGDRRRLLLRGLTQSLPEILPLLYTLLER HFGAAFSEASRQQLDVAKEHAATVTATLNAINAYADWAPLPDLAKFGIIHGCGFLLSAVDFRLHACEFFKLISSRKRTIDASVSEFDSAISSIFQILMNV SGDFLYKSSSTAAAVDENEIEFVEYICESMVSLGSTNLRCISGNSSILSIYLQQMLGFFQHYKLGLHYQSLLFWLALMRDLVSKSKVTSAASGVGSGSAQ LDNEKLIILNLVDDNICRSILDTSSQRMLRKEKAFPGAAFALGTLELWSDDVEGKGDFGQYRSKLLELMRLMASFKPIIASSKISDRIISGINSPLTSPV PVQDLAVMESLQVSLENIVNVVFDGSNELAGGSSELHLAVCRIFEGLLQRLLSLKWMEPTLVEILGHYLDALGPFLKYFPGAVGGVINKLFELLTSLPLV VENPSITDARRARLQICMSFIRIAKASDKSILPHMKGIADTMGHMQREGCLLRSEHNLLGEAFLVMASAAGLQQQHEVLNWLLEPLSQQWIQLDWQNKYL SEPLGVVRLFLDTPLMWSIFHTVTFFEKALKRSGFKKSNLYTQNSSSTNPPMHPLSSHLAWMLPPLLKLLRALHALWSPSLSQMLPAEVKAAMLITDAEK YSLLGEGNPKLSKNILTSTDSSQTNNSKEGHAEINQGDARNWLKGIRDSGYNVLGLATTIGDPFFKCLDADSVALALMENVQSLEFRHLRQLIHSVLVHL IKFCPQELWEVWLEKLLHPLFVHIHQVLSFSWSSLLHEGRAKAPDVQGIVAGSDLKVEVMEEKLLRDLTREMCTFLSVMASPGLNNGLPTLEQSGHINRV DTSSLKDLDAFLSKSMVAFILMHSSLALPALQICLEAFTWTDGESMTKVSSFCAAVVVLAISTRNLELQQFVCTDLFSAAIKGLALESNAIISADLVSLC REIFIYLCDRDPAPRQASDQALVLLSLPCISPHDLAAFEEALTKTSSPKEQKQHMRSLLMLASGNKLKALAAQKSVNIITNVTARHRSSATASETRIEDG EPVGLEAIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	0	1
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	2.2	0.9343
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	2.4	0.9008
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	3.9	0.8953
AT3G50380			Protein of unknown function (D...		Lus10022476 [exp]	5.3	0.9239
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	5.5	0.8827
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	6.5	0.8692
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	9.0	0.8614
AT5G27970			ARM repeat superfamily protein...		Lus10004115 [exp]	10.6	0.8614
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	12.4	0.8718
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	14.3	0.8969

Compare expression of checked genes

Lus10018994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.