Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05060 731 / 0 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27120 729 / 0 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 486 / 1e-168 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G56110 339 / 3e-110 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 329 / 6e-107 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G60170 103 / 2e-23 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033846 [exp] 890 / 0 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10004143 [exp] 821 / 0 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10001716 [exp] 820 / 0 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10007265 [exp] 347 / 2e-115 AT3G05060 310 / 1e-101 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10017214 [exp] 330 / 6e-107 AT1G56110 783 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10021096 [exp] 330 / 1e-106 AT1G56110 782 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10029168 [exp] 112 / 5e-26 AT1G60170 707 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10012997 [exp] 111 / 9e-26 AT1G60170 705 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10040032 [exp] 94 / 7e-21 AT1G56110 231 / 1e-71 homolog of nucleolar protein NOP56 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045600 [exp] 791 / 0 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.013G032300 [exp] 790 / 0 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 333 / 6e-108 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1) Potri.015G092900 [exp] 332 / 3e-107 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.014G102800 [exp] 115 / 3e-27 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.002G176000 [exp] 112 / 2e-26 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08156 [flax] [poplar] NOP5NT NOP5NT (NUC127) domain PF01798 [flax] [poplar] Nop snoRNA binding domain, fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10018995 pacid=23150005 polypeptide=Lus10018995 locus=Lus10018995.g ID=Lus10018995.BGIv1.0 annot-version=v1.0 ATGTTAGTGTTGTTTGAGACTCCGGCGGGTTTTGCCCTTTTTAAAGTTTTGGATGAAGGGAAGCTTTCCAAAGTTGAGGACTTGTGGAAGGATTTCTCTA ACGCTGATACAGCTAGAAAGGTGGTGAAGCTGAAAGCATTTGACAAGTTTGGGAACACGGCAGAGGCTTTGGAGGCTGCAACTAAAATCATTGATGGATC AACCACAAAAGCTCTGCGCAAGTTCTTGAAAGCTAACTGTGGAAGTGAGCAATTGGCTGTGGCCGACTCAAAGCTTGGAAACGCAATCAAGGAGAAATTG AAAATAGATTGTGTGCACAACAATGCTGTCATGGAATTGATGAGAGGTGTGAGAAGTCAGTTAACTGAACTGATAGCTGGGCTGCCGAATCAAGATTTGG CTCCAATGAGCTTGGGTCTGTCTCATAGCCTGTCTAGATACAAGCTTAAGTTCAGTCCTGATAAGGTTGACACTATGATTATTCAAGCAATTGGCTTACT TGATGATCTTGATAAGGAACTTAATACATATGCCATGAGAGTCAGGGAATGGTATGGTTGGCATTTTCCAGAGCTTGCAAAGATTGTGCAAGATAACATA GTCTATGCTAAAGCAGTGAAACTGATGGGTTTCCGTGAAAATGCTGCAAAACTTGATTTCTCTGAGGTATTAACTGAAGAAGTTGAGTCGGAAGTGAAGG AAGCAGCCATGATATCAATGGGGACTGAAATTAGTGAACATGACTTGACAAATATCAGGCAACTATGTGACCAGGTCTTGTCTCTCTCTGAATACAGGGC TCAGCTGTATGATTATCTGAAAAGTAGGATGAACACCATCGCACCTAACTTGACTGCTCTGGTCGGAGAGCTCGTTGGAGCACGCCTAATTGCCCATGGA GGTAGCTTGTTGAATCTTGCCAAGCAGCCTGGCAGTACAGTTCAGATCCTTGGCGCAGAAAAGGCCCTTTTCAGAGCTCTAAAAACAAAGCACGCGACTC CAAAATACGGCTTAATATACCATGCTTCTCTGGTTGGCCAAGCTCCACCTAAGATGAAAGGGAAGATTTCTAGGTCCCTTGCTGCTAAAGCTTCTCTGGC AATTAGATATGATGCTCTTGGAGATGGCCAAGATAACTCGATGGGATTGGAGAACCGTGTCAAGCTTGAGGCTCGACTAAGGAATCTCGAAGGCAAGGAA CTGGGTCGTGCAGCGGGTTCGGTTAAAGGCAAGCCATTGATTGAGCCTTATGACAAGGATAGAAAGAAGGGAGCTGGTGGACTGATAACTCCTGCCAAGA CTTATAATCCTTCTGCGGATGCTGTTCTTGGTGAGACACCTAAATCAATGGATGTAGACACCATTGAGAAGAAGGTGGTTGAAAAACCAGCTGAGGAAGC TCCAGCTACCGAAGAGAAGAAGGAAAAGAAAAAGAAGAAAAAGAGCAAAGATGTGGATGCTGAAGTTGCTGAACAAGAAGATGACGACGGTGCAGCAAAG AAGGAGAAGAAGTCTAAGAAGAAGGAAGAAGCTGCTGGTGCACAGGTTGAAGTGGAGGACGGAGAAAAGAAAAAGAAGAGAAAGCGTTCTGAACCAGCGG AAGAATCAGAGACGCCTAGCAAGAAGGATAAGAAGAAGAAAAAGAAGAAGAATGATGAGTGA
AA sequence Show only first row Show all	>Lus10018995 pacid=23150005 polypeptide=Lus10018995 locus=Lus10018995.g ID=Lus10018995.BGIv1.0 annot-version=v1.0 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSNADTARKVVKLKAFDKFGNTAEALEAATKIIDGSTTKALRKFLKANCGSEQLAVADSKLGNAIKEKL KIDCVHNNAVMELMRGVRSQLTELIAGLPNQDLAPMSLGLSHSLSRYKLKFSPDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIVQDNI VYAKAVKLMGFRENAAKLDFSEVLTEEVESEVKEAAMISMGTEISEHDLTNIRQLCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLIAHG GSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAPPKMKGKISRSLAAKASLAIRYDALGDGQDNSMGLENRVKLEARLRNLEGKE LGRAAGSVKGKPLIEPYDKDRKKGAGGLITPAKTYNPSADAVLGETPKSMDVDTIEKKVVEKPAEEAPATEEKKEKKKKKKSKDVDAEVAEQEDDDGAAK KEKKSKKKEEAAGAQVEVEDGEKKKKRKRSEPAEESETPSKKDKKKKKKKNDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27120			NOP56-like pre RNA processing ...		Lus10018995 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Lus10021669 [exp]	1.7	0.8669
AT5G27120			NOP56-like pre RNA processing ...		Lus10033846 [exp]	3.9	0.8371
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	7.6	0.8495
AT1G30880			unknown protein		Lus10001224 [exp]	9.5	0.8320
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	11.5	0.8418
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10021296 [exp]	12.7	0.8346
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	13.5	0.7811
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	15.5	0.8428
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	17.2	0.8061
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10018683 [exp]	19.4	0.7798

Compare expression of checked genes

Lus10018995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.