Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026462 [exp] 229 / 3e-75 ND / Lus10033180 [exp] 195 / 5e-61 ND / Lus10005607 [exp] 161 / 3e-49 ND 38 / 0.003 Lus10039950 [exp] 132 / 4e-39 ND / Lus10022156 [exp] 128 / 2e-36 ND / Lus10032814 [exp] 119 / 1e-33 ND / Lus10043004 [exp] 114 / 7e-30 ND 47 / 8e-06 Lus10026752 [exp] 107 / 3e-29 ND / Lus10005026 [exp] 107 / 5e-29 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018996 pacid=23149964 polypeptide=Lus10018996 locus=Lus10018996.g ID=Lus10018996.BGIv1.0 annot-version=v1.0 ATGGCACAACAAAGGAAGTTTTGGAATGTTGATGTAATAAGCCATGAGGGCGGTAGGGAGAGGAAGTCTATTGCTAGTGCACGGATGCTTACCCTTGATC TTGGAATGAAGGTTATCATCCCATTTGAAAATAAATTGCCAAGTGGAACCAATCCTGTCGGACTTTTTGGTCAGTTCCTCAGGATGATTGCAAAAGATCA CAACATTCTTCCCGTGCACTATGATGGATGGTCATATGTGTGTGACACACAGAAGGCAGCGGCAGCGGCAACCAAGCCTAGACAGATTCCAGTCTCGATG TGGACACAATTTATGGACTACAAGCTGAGACCAGAAGTTCTGACATTAGAAGAGAAGAATGTTGCAAACAGAGCTGTTTTTGATGCACCGCACACTGGTG GCTCGAAGAAGCTATTAGTTAGAGGAGTGGAGATTGGACCAAGGTTGATATTTGGCACTTATCTTCAACGTGAACTCCAGGTGAGTTCCCAGGATCTGAC GCGGCAACATGAACTCCTGATTGGAGTATTACAAGTAGGATATGAAGTGACTACTCCTTCTCGGGTTGGACTAAGTAGGAAGGGTAAAGGCATTGGACAG TCTAGTGCAGACGGTAATCAATCACATTCTCATCTCAGAGGACATTGTCCTACCGCATCTGAGGCACTGGATCGTGCTCATGCTTTGGAAGAAGAAATCC GCTTGATGAGGGAAGAAATGACACGAGAAAAGCAACAAGTGCAAGAAGATGAAAAGGAATAA
AA sequence Show only first row Show all	>Lus10018996 pacid=23149964 polypeptide=Lus10018996 locus=Lus10018996.g ID=Lus10018996.BGIv1.0 annot-version=v1.0 MAQQRKFWNVDVISHEGGRERKSIASARMLTLDLGMKVIIPFENKLPSGTNPVGLFGQFLRMIAKDHNILPVHYDGWSYVCDTQKAAAAATKPRQIPVSM WTQFMDYKLRPEVLTLEEKNVANRAVFDAPHTGGSKKLLVRGVEIGPRLIFGTYLQRELQVSSQDLTRQHELLIGVLQVGYEVTTPSRVGLSRKGKGIGQ SSADGNQSHSHLRGHCPTASEALDRAHALEEEIRLMREEMTREKQQVQEDEKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018996 [exp]	0	1
					Lus10030762 [exp]	1.0	0.9964
AT5G46090			Protein of unknown function (D...		Lus10018635 [exp]	2.0	0.9777
					Lus10008409 [exp]	3.0	0.9699
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	3.5	0.9525
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10018220 [exp]	7.1	0.9545
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	7.5	0.9301
AT1G73110			P-loop containing nucleoside t...		Lus10024092 [exp]	7.5	0.9348
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	7.5	0.9552
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	8.0	0.9107
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10035974 [exp]	13.4	0.9251

Compare expression of checked genes

Lus10018996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.