Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033847 [exp] 544 / 0 ND / Lus10018970 [exp] 223 / 6e-74 ND / Lus10018971 [exp] 47 / 6e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032900 [exp] 174 / 1e-52 ND / Potri.005G047000 [exp] 117 / 6e-31 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018997 pacid=23149994 polypeptide=Lus10018997 locus=Lus10018997.g ID=Lus10018997.BGIv1.0 annot-version=v1.0 ATGGCAACCTATGGAAATACTTACAAAGGATACACCACCTACAGCACACCGCAAGCTAACGGCTGGAGCGAACCCAGTAGCTATTCTTCTGATCACGTTT GCAAGCCAGTGATCATTGATTCTCAAGGGAGGAAGAGGCCCATCATTGCTCTCACGCCCACCAACACTGCCGAACACTATCGATCTTCTGAGGCCTCGCA TCATCATCAGCACAATGCTCATTCGCCTTACCCCTCTGAGAACAAGCATGGCCATTCCATGGAGCCTACAATGGTGGAGCACTACAGAATTGAGCAAAAA TTGCATCAGACTTCAGACCCTATTTACGATCGCTTGCAGAAGGTAGGGGAGATCATCACCACGGTGCAGCAGGAGGTTAGCACTCCCAAGTTCGGAGCTT TCAATGCTGCTCAGTCGCACCACTCCCCTAAACATGCAGGCTTCATTGACAGTCATCATGGGGACAAAGAGTGGCAGAGGTCAAATGGCCACGCCCACCA GAACGACAACAGGTACGAGGATTATTACCGGAAGCCAGCAATCTCATCGGAGCCAACTATGTTCACCACCAATGGTGGATGGGCTAGGCCAACTCAGACA ACTTGGGCGTCACAACCAGATTCAAAAATTTCAGGTCCAACAAATAATATCAGCACAGCCATAGGATACCTGAAAGAAGCTGTCAAACCTTCTGTCACTA ATCCCCAACCTTACAGTTACAGACACGCTGAGCCACCTTACTCAGAAACCCATCATGGCAAGATGGAGTCCACCTATCCCCCTGGCCATTATGCCACGAC TGCTCCAAGGTATAATGAGGCAGGACACAATAAAACTATTGACAGCAATGGAGGTGCAAGAAGGTATGGAAATTTCAAATTCTCACCCAGGACATTTACG TGA
AA sequence Show only first row Show all	>Lus10018997 pacid=23149994 polypeptide=Lus10018997 locus=Lus10018997.g ID=Lus10018997.BGIv1.0 annot-version=v1.0 MATYGNTYKGYTTYSTPQANGWSEPSSYSSDHVCKPVIIDSQGRKRPIIALTPTNTAEHYRSSEASHHHQHNAHSPYPSENKHGHSMEPTMVEHYRIEQK LHQTSDPIYDRLQKVGEIITTVQQEVSTPKFGAFNAAQSHHSPKHAGFIDSHHGDKEWQRSNGHAHQNDNRYEDYYRKPAISSEPTMFTTNGGWARPTQT TWASQPDSKISGPTNNISTAIGYLKEAVKPSVTNPQPYSYRHAEPPYSETHHGKMESTYPPGHYATTAPRYNEAGHNKTIDSNGGARRYGNFKFSPRTFT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018997 [exp]	0	1
					Lus10033847 [exp]	1.0	0.9893
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	2.0	0.9736
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	2.4	0.9681
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	3.5	0.9594
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003944 [exp]	4.7	0.9056
AT3G16330			unknown protein		Lus10038274 [exp]	5.5	0.9438
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	6.3	0.9087
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	6.5	0.9277
AT1G52400		ATBG1, BGLU18, ...	BETA-GLUCOSIDASE HOMOLOG 1, A....		Lus10030575 [exp]	7.3	0.9428
AT5G06850			C2 calcium/lipid-binding plant...		Lus10023823 [exp]	9.8	0.9155

Compare expression of checked genes

Lus10018997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.