Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54570 803 / 0 Esterase/lipase/thioesterase family protein (.1) AT5G41130 589 / 0 Esterase/lipase/thioesterase family protein (.1.2) AT5G41120 585 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G26840 581 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G02030 553 / 0 transferases, transferring acyl groups other than amino-acyl groups;acyltransferases (.1) AT3G26820 508 / 4e-172 Esterase/lipase/thioesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033848 [exp] 1253 / 0 AT1G54570 770 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10041529 [exp] 608 / 0 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Lus10012560 [exp] 606 / 0 AT5G41120 663 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10039135 [exp] 45 / 0.0002 AT3G51520 421 / 2e-148 diacylglycerol acyltransferase family (.1) Lus10013796 [exp] 44 / 0.0004 AT3G51520 424 / 2e-149 diacylglycerol acyltransferase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046700 [exp] 929 / 0 AT1G54570 868 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033000 [exp] 922 / 0 AT1G54570 823 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033300 [exp] 922 / 0 AT1G54570 850 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033600 [exp] 899 / 0 AT1G54570 830 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046600 [exp] 899 / 0 AT1G54570 831 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033101 [exp] 844 / 0 AT1G54570 796 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G324400 [exp] 672 / 0 AT5G41130 745 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.001G324200 [exp] 660 / 0 AT5G41120 734 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G323800 [exp] 642 / 0 AT5G41130 686 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.017G062200 [exp] 636 / 0 AT3G26840 644 / 0.0 Esterase/lipase/thioesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF03982 [flax] [poplar] DAGAT Diacylglycerol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018998 pacid=23149973 polypeptide=Lus10018998 locus=Lus10018998.g ID=Lus10018998.BGIv1.0 annot-version=v1.0 ATGACTTCATTGGTTGCCTTCCCTGTATCCCTCCCTTTATTGAAATTTTCAGAGAGGAAGCCTCAGCTTCAAGTGAAGGTTCGCTGTTCAGATAGTGGCG CATCATCAGCAGCATTTTCATCTGATTCCTTTCTCCTAAATGGAAGAAGCAAAGATGAGGTGGATGTGCTGTTCAATGGAGGTGTTGGACGGAAAGAGAA GAGCATGGAGCCTTTGATCGATGGAGGAAATGGGAGACCAAGCTCTAGCAGGAGAGGGAGAGATCTTATTACCAAGGGCATGGATGTGTTGTGGGATGAT GGATATGGCATTAAGACTATTAAAGACTATCTTATTGAAGCTGAAGATATGATTAAGCCAGATGGTGGGCCACCCCGCTGGTTTTGTCCTGTTGAATGTG GACAACCTCTCAGAGATTCTCCTGTTCTTCTGTTTCTGCCTGGGACTGACGGCGTTGGATTGGGACTTGTGTTGCACCATAAAGCTCTTGGGAAGGTGTT TGAAGTTAGGTGCCTCCATATTCCAGTTGAAGACCGAACTCCGTTCCAAGGCCTGGTAAATTTCGTGGAAGAAACTCTAAAGATTGAGCATGCGTCATCT CCGAATAGACCGATTTACATAGTAGGGGATTCATTTGGAGGATGTTTAGCACTTGCTGTCGCTGCCCGCAATCCTCAAATAGACCTTGTTGTTATATTAG CCAATCCAGCTACTTCATTTTCAAGGTCTCAGATTCAACCGTTGCTCCCTCTGTTGGAGGCTATTCCTGATGGATTGCATAATGTCGTTCCTTATCTTTT GAGCTTTGTGATGGGTAATCCACTGAAAATGGCAATGGTCAATGTGGAAGATAAGCTTCCTCCAAGGGCTCAAATCGAACAGTTGTCAGGAAATCTTACA TCTTTACTCGGTTATCTTTCTGGTTTAAGTGACATTATCCCAAAGGAAACTCTTGCTTGGAAGTTGAAACTGATACAGTCAGGTGCAGCTTATGCTAATT CACGCCTGCATGCTGTAAAAGCTGAAGTGCTACTACTTGCTAGCGGCCAAGATAACTTGCTTCCCAGTAAAGACGAAGCTGTACATCTTAAAAAAGTGTT GCAGAATTGTACAGTTCGTTACTTCAAGGACAATGGCCATACCATTTTAATGGAAGAGGGCCTCAGCTTGCTTACTATCATTAAGGGTACCTGCAAGTAT CGCCATTCCAGGAAGATTGATCTTGTCACGGACTTTGTACCACCTAGCAAATCGGAATTTGAACGAGTATTTTTCAAAGACGGAAGGATATTTCAGGTAG CTGCTGAACCTGTGATGCTCTCTACTCTTGAAGATGGAAGTATTGTGAAAGGTCTCTCTGGGGTTCCAACAGAAGGACCTGTGCTATTAGTTGGGTACCA CATGCTGATGGGTCTTGAACTGAATTCCCTTGTTGGGGAGTACTTGAGACTGAAGAATATCCTCCTACGTGGGATAGCTCATCCAGAACTATTTCTTGGG AGAATGGAGTCCTCCTCTACTGAATTTAATTTCCTCGACTGGATTAAAGTAATGGGCGGAGTGCCTGTATCAGCTTCCAATTTTTACAAATTGCTGTCAA CAAAATCACATGTGCTGCTTTATCCTGGAGGTGCTCGCGAGGCTCTACATTACAAGGGTGAAGCACACAAGTTGATTTGGCCTGAACAGCAGGAATTTGT GAGAATGGCTGCAAAATTCGGAGCCACTATTGTACCATTCGGAGGCGTGGGTGAAGATGATTTAGTAGAGTTGGTGCTTGATTACAAAGACATGATGAAT ATCCCTATCCTTAATGACTATATTAGAGAGCAAGCTCGCGATGCTCCTAGATTAAGAGATGAGGCGAAGGGGGAGGTTGCCAACCAAGAACTGTTTATTC CGGGACTGTTGCCAAAGGTCCCTGGCCGCATCTACTTCCTGTTTGGGAAGCCTATAGTGACTAAAGGAAGAGAAGACATCTTAAGAAACAAAGAAGATGC AAACCAGCTCTACTTGCAGATAAAATCGGATGTTGAAGAGAATATAGCCTACCTGTTGAAGAATAGAGAGAAGGATCCTTATCGTAGTGTCATTGACAGA ATCGTCCATCGCGCACTAAATCCTTCATCGCAAGAAGTTCCCGCATTCGATCTGGAACAAGTCCATGGCAGTTAA
AA sequence Show only first row Show all	>Lus10018998 pacid=23149973 polypeptide=Lus10018998 locus=Lus10018998.g ID=Lus10018998.BGIv1.0 annot-version=v1.0 MTSLVAFPVSLPLLKFSERKPQLQVKVRCSDSGASSAAFSSDSFLLNGRSKDEVDVLFNGGVGRKEKSMEPLIDGGNGRPSSSRRGRDLITKGMDVLWDD GYGIKTIKDYLIEAEDMIKPDGGPPRWFCPVECGQPLRDSPVLLFLPGTDGVGLGLVLHHKALGKVFEVRCLHIPVEDRTPFQGLVNFVEETLKIEHASS PNRPIYIVGDSFGGCLALAVAARNPQIDLVVILANPATSFSRSQIQPLLPLLEAIPDGLHNVVPYLLSFVMGNPLKMAMVNVEDKLPPRAQIEQLSGNLT SLLGYLSGLSDIIPKETLAWKLKLIQSGAAYANSRLHAVKAEVLLLASGQDNLLPSKDEAVHLKKVLQNCTVRYFKDNGHTILMEEGLSLLTIIKGTCKY RHSRKIDLVTDFVPPSKSEFERVFFKDGRIFQVAAEPVMLSTLEDGSIVKGLSGVPTEGPVLLVGYHMLMGLELNSLVGEYLRLKNILLRGIAHPELFLG RMESSSTEFNFLDWIKVMGGVPVSASNFYKLLSTKSHVLLYPGGAREALHYKGEAHKLIWPEQQEFVRMAAKFGATIVPFGGVGEDDLVELVLDYKDMMN IPILNDYIREQARDAPRLRDEAKGEVANQELFIPGLLPKVPGRIYFLFGKPIVTKGREDILRNKEDANQLYLQIKSDVEENIAYLLKNREKDPYRSVIDR IVHRALNPSSQEVPAFDLEQVHGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	0	1
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	2.6	0.8967
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	3.5	0.8703
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10038921 [exp]	4.2	0.8361
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	10.5	0.8517
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	11.2	0.8435
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10006613 [exp]	12.0	0.8150
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	12.5	0.8051
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	14.2	0.8413
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	15.2	0.8339
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	18.5	0.8405

Compare expression of checked genes

Lus10018998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.