Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27950 584 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55550 336 / 8e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 244 / 8e-70 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 238 / 3e-67 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G65930 233 / 1e-65 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT5G27550 228 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27180 217 / 3e-61 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G54670 214 / 2e-60 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G21270 210 / 1e-58 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 209 / 2e-58 ATK5 kinesin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033849 [exp] 1082 / 0 AT5G27950 662 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035954 [exp] 242 / 5e-69 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 227 / 1e-63 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10018384 [exp] 224 / 1e-63 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10007629 [exp] 224 / 2e-63 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10029914 [exp] 222 / 9e-63 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005582 [exp] 223 / 4e-62 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 223 / 6e-62 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10006064 [exp] 221 / 2e-61 AT5G65930 1877 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G033900 [exp] 743 / 0 AT5G27950 676 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G000800 [exp] 341 / 8e-106 AT1G55550 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G223800 [exp] 338 / 1e-104 AT1G55550 647 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 243 / 2e-70 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G110600 [exp] 244 / 1e-69 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.011G140000 [exp] 236 / 2e-66 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G455300 [exp] 230 / 2e-64 AT5G65930 1881 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.001G436200 [exp] 229 / 4e-64 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 225 / 4e-64 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G146700 [exp] 227 / 1e-63 AT5G65930 1864 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10018999 pacid=23149962 polypeptide=Lus10018999 locus=Lus10018999.g ID=Lus10018999.BGIv1.0 annot-version=v1.0 ATGAAGTCGGATCATGAGATTGAACTGAAAGCAACTGTTTACACTGATGTCAACGTTATTCCTGAGAGTGACGACCTTGACATGTCAATATTGAATCTTG AAGGAGAAATTGCAGAGCTGAGACAGAAAATAGAGTCATTTGACAAGAGGAGGAGGGAGGCCTTGAAGTGGATATTGGACATTAAAGGCAGCATCAGAGT GTTCTGTCGAGTAAGGCCTTTCTTACTAACAGAAAGGAGAAGGATCCATGAACCCATCTCGGTTTACTTGCACAAGGTCGTGGTTAAGTCTGTTGGAAGC AAGAAAGAGTTCAGATTTGATAAAGTTTTCCACCAGTCTGCTAACCAAGATGATGTGTTTGTGGAGGTTGAGCCAGTGCTTAAATTGGCACTTGATGGAC ACAATGCATGCGTATTGGCATATGGTCAAACTGGGACTGGCAAAACATTTACGATGGATGGTCTTAATACTCAACCTGGGATCATACCACGAGCTTTAGA AGTTCTTTTTCGTGAGGTCTCATTTGAGAAGTCATCATCTGTAACATTTTCCATGAGCATGCTGGAGGTTTACATGGGTAGCCTCAAGGACTTGCTTGCT CCGAAAGCATCAGCTCGATGCAATCTCAACATTCAGACAGATCCAAAAGGAATGGTGGACATTGAAGGTCTAACCGAGGTTCCACTTCCAAACATTGCAA AAGCAAAATGGTGGTACTCCAAGGGAAGGAGATGTAGGTCAACTTCATGCACTAATGTGAATGACACATCAAGCAGCTTAATGAAGATTACGATCTCTAG AGATGGCGAAAACAAGCAAGGTATACTAGAAGTGAGCAAATTATGGATGGTTGATCTTGGAGGTAGTGAAAGGTTGTTAAAGACAGGAGCCACTGGGCTT ACCCTTGATGAAGGAAGAGCCATCAATCTCTCTCTTTCTGCACTTGGTGATGTTATTGCTGCTCTCAGAAGGAAAAGAGGCCATGTGCCTTACAGGCATG TTCTTAGTTACTATTCACATTTTTGTGTTTGCAGAAATAGCAAATTAACTCAGATACTGAAAGATTCCTTAGGTCATAGTTCAAAGGTTCTGATGCTTGT GCATATAAGCCCATGTGAAGAAGACGTACGAGAGACAATATGCTCGTTGAGCTTTTCGAGTAGAGCAAGAGGAATTGAGACTGATAGAGAAGTTGCAGAG GATGTAAGCAAGGAGAGAGATAAAAGGATAGTGGAACTTGAAGATGAGATGAAAGAAGCAGAGGAAGAATGCCAGAAACTAAGGAATCAAATAAGGAAGG CAGAGTTTCTCGTTCATGAATACAGGAAGCCATTGTCAAGCACTTGCCAACTTTCTGAAGACAAGGAAAACATATCATCATCAGAAGCTCCTGAAGAGAA CAAGAAAGAAACCAACAACTCAATGACAAAATCTGCTGAAAGAGGAGTGAAGAGAAACATTGTTACTTCACTGCCAAGATTCATGACTTCTACTGCTGCA AGTCGCCACAGGCAAAGTGCTGCAGAAAGAGAAGTTGTAGGGAGGGCAAGAAGTTTGAGATCAGAGGCAACAAGAAGCTCCGTTCAGTTATCGTGTTCCC AGTCACTCAGTTACTCGGAAATCCGTCTCAAATCCATATTACGAGATACGAATAAGAAATCAAGGTATGGTGAAATAAAAACTGCTGCCCTCTCAGAAAG TCCCACAGCCATAAAATGCAACAGTTCTGATCACTCCAAGGTTGCTTCCACCCCAAGAAGCAAGTTTGTAACTTCATCAGTTCCAAACTTTAGAACTACA GTAGCTAATCACAGGAGAAGAATGTCTGATCTGACCTAA
AA sequence Show only first row Show all	>Lus10018999 pacid=23149962 polypeptide=Lus10018999 locus=Lus10018999.g ID=Lus10018999.BGIv1.0 annot-version=v1.0 MKSDHEIELKATVYTDVNVIPESDDLDMSILNLEGEIAELRQKIESFDKRRREALKWILDIKGSIRVFCRVRPFLLTERRRIHEPISVYLHKVVVKSVGS KKEFRFDKVFHQSANQDDVFVEVEPVLKLALDGHNACVLAYGQTGTGKTFTMDGLNTQPGIIPRALEVLFREVSFEKSSSVTFSMSMLEVYMGSLKDLLA PKASARCNLNIQTDPKGMVDIEGLTEVPLPNIAKAKWWYSKGRRCRSTSCTNVNDTSSSLMKITISRDGENKQGILEVSKLWMVDLGGSERLLKTGATGL TLDEGRAINLSLSALGDVIAALRRKRGHVPYRHVLSYYSHFCVCRNSKLTQILKDSLGHSSKVLMLVHISPCEEDVRETICSLSFSSRARGIETDREVAE DVSKERDKRIVELEDEMKEAEEECQKLRNQIRKAEFLVHEYRKPLSSTCQLSEDKENISSSEAPEENKKETNNSMTKSAERGVKRNIVTSLPRFMTSTAA SRHRQSAAEREVVGRARSLRSEATRSSVQLSCSQSLSYSEIRLKSILRDTNKKSRYGEIKTAALSESPTAIKCNSSDHSKVASTPRSKFVTSSVPNFRTT VANHRRRMSDLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27950			P-loop containing nucleoside t...		Lus10018999 [exp]	0	1
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	4.2	0.8417
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	7.7	0.8221
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	7.9	0.8363
AT5G27950			P-loop containing nucleoside t...		Lus10033849 [exp]	8.0	0.8690
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	14.8	0.7919
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10017009 [exp]	16.1	0.8386
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	16.1	0.8300
AT4G25315			Expressed protein (.1.2)		Lus10019851 [exp]	18.8	0.8211
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	23.1	0.7790
AT5G35740			Carbohydrate-binding X8 domain...		Lus10001167 [exp]	26.5	0.8353

Compare expression of checked genes

Lus10018999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.