Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05100 449 / 3e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033850 [exp] 610 / 0 AT3G05100 452 / 8e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001712 [exp] 519 / 0 AT3G05100 474 / 2e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004147 [exp] 516 / 0 AT3G05100 471 / 6e-168 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046300 [exp] 489 / 4e-175 AT3G05100 484 / 2e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G034000 [exp] 485 / 1e-173 AT3G05100 481 / 5e-172 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019000 pacid=23149963 polypeptide=Lus10019000 locus=Lus10019000.g ID=Lus10019000.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTCTCTTCTCCGCCTCCGCAGAAAGGCATTGTCGTCACCGTTCCATTTCTTGTCCTCGCCGCCTCCTTTGTCGCTCTCACTCTCTTCTTCC TCGCCACTTCCATCTCCCCTCCTTGCTCCTGCTCCCTTCCTCCTCCGGCCCCCTTCCCATCATCATCATCATCATCCTCCGCCGACAGGTCGGTAGTGGA GAGGGTGTCGGCGACAGCAGATGATGTTAACTGGGTGAAAGATCAGATCGTAAGGAATGGTTTACGTATGCAGGACAATATTCTGCGCAAAGGGATTAAT CCTCGCACTCGGGCTCACCAGCTCCAAGATCTCATCCAGTACAAGGGCATCTCACACTACGGAGGAGTCGATTCCGACAACCACACGGCTCTCCCCTGTC CCGGTGAACTCCTGGTGGAAGAACACCATAGCAATTATGGAGAGCCATGGGCAGGCGGGAGGGATGTTTTCGAATTCCTTGCCGAGGCCTCTAACCTGTC ACCAAACTCCCAGGTTCTTGAGATCGGCTGTGGCACCTTGCGCGTGGGCCTGCATTTCATCCGTTACCTTAGTTCAGGACGCTTCCATTGTCTCGAGAGG GACGAGCTTTCCCTAATGGCCGCTTTGAGATACGAGCTTCCATCTCAGGGTCTTCTTCACAAGCGGCCAGTGATTGTCCGTGGAGATGACATGGATTTTA CTAGGTTCGGACCTGGTGTTTCATACGATTTGATATATGCTAGCGCTGTGTTTCTCCACATGCCGGATAGACTTGTCTGGAAAGGACTTGGAAGGTTAGC CAGTAAGTTGAATCCTGACACGGGGAGAATATTTGTGTCACACAATATAAAGTTCTGTACCAGATTGGGAGGTGAAGAATGTACCAAGAAGTTGAGTGAT ATGGGACTTGAATATATTGGCAAGCGTACACACGACAGTTTGCTTTTCAATCACTATGAGATCTGGTTCGAGTTCAGACGGTCCAAAAATCAAGGAAGAC GCTGA
AA sequence Show only first row Show all	>Lus10019000 pacid=23149963 polypeptide=Lus10019000 locus=Lus10019000.g ID=Lus10019000.BGIv1.0 annot-version=v1.0 MAFLSSPPPQKGIVVTVPFLVLAASFVALTLFFLATSISPPCSCSLPPPAPFPSSSSSSSADRSVVERVSATADDVNWVKDQIVRNGLRMQDNILRKGIN PRTRAHQLQDLIQYKGISHYGGVDSDNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASNLSPNSQVLEIGCGTLRVGLHFIRYLSSGRFHCLER DELSLMAALRYELPSQGLLHKRPVIVRGDDMDFTRFGPGVSYDLIYASAVFLHMPDRLVWKGLGRLASKLNPDTGRIFVSHNIKFCTRLGGEECTKKLSD MGLEYIGKRTHDSLLFNHYEIWFEFRRSKNQGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10019000 [exp]	0	1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	4.5	0.8489
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	5.5	0.8495
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	11.6	0.8340
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10028511 [exp]	16.1	0.7983
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	16.9	0.8212
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10032854 [exp]	19.0	0.7847
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10037200 [exp]	19.4	0.8079
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Lus10005932 [exp]	20.5	0.8171
AT1G35780			unknown protein		Lus10020921 [exp]	21.4	0.8033
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	22.6	0.7866

Compare expression of checked genes

Lus10019000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.