Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22490 226 / 8e-74 Seed maturation protein (.1) AT3G22500 198 / 4e-63 ATECP31 LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31, Seed maturation protein (.1) AT5G27980 156 / 1e-47 Seed maturation protein (.1) AT1G03120 105 / 1e-27 ATRAB28 responsive to abscisic acid 28 (.1) AT5G53260 73 / 1e-15 Seed maturation protein (.1) AT5G53270 66 / 3e-13 Seed maturation protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015948 [exp] 220 / 3e-72 AT3G22490 152 / 6e-46 Seed maturation protein (.1) Lus10010553 [exp] 201 / 4e-64 AT3G22490 302 / 1e-103 Seed maturation protein (.1) Lus10006121 [exp] 187 / 2e-58 AT3G22490 311 / 1e-107 Seed maturation protein (.1) Lus10042604 [exp] 125 / 1e-34 AT3G22490 234 / 5e-77 Seed maturation protein (.1) Lus10022058 [exp] 59 / 4e-11 AT3G22490 98 / 6e-26 Seed maturation protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048000 [exp] 256 / 7e-86 AT3G22490 229 / 4e-75 Seed maturation protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04927 [flax] [poplar] SMP Seed maturation protein
Representative CDS sequence Show only first row Show all	>Lus10019001 pacid=23149989 polypeptide=Lus10019001 locus=Lus10019001.g ID=Lus10019001.BGIv1.0 annot-version=v1.0 ATGAGCCAGCACCAACAGCCACAAAGGCCGCAAGACCCAGTAAATTATGGGGATCTCTTCCAGGACGTGCAGGGTGAGCTGGCGGAGAAGACGGTGGCCC CTAGAGACGCCGCCATGATGCAAACTGCCGAGAATAAGTTGACCGGCAATATCAAGAAGGGCGGTGCGGCTGCCGTTATGCAATCGGCCGCTGACAAGAA CGAAAGGGCTGGGTTTGTCAGCCATGATGATGTTAGCCATGTCGCCGACGACCTAGGTATTAGCGCTACCGAGATTGATTTCCCTGCCGGCGGAAGCGTC ATCACCGAATCTGTCGGCGGACAGGTTGTTGGGAAGTTTGACAAGGTGGAATCAAAGGTGCCGGCGACTCAGCAGGGCGGTGGAGCGGTGATGATAGGGG AAGCGTTGGAAGCAGCGGTGCTAACGGCAGGGAAGAAGCCAGTAGAGAGAAGCGACGCGGCAGCCATTCAAGCAGCGGAGGTTAGAGCAACGAGCCGCAC CACCATCGTTCCTGGAGGGATAGCCGCCGCAGCTCAGTCGGCAGCCATTCTCAACGCTAGGGCTACAACTGACGAGGAGAAAACTACTCTCGCCGATGTG CTCTCTGACGCAAAAGAAAAGCTGCCGGCAGACAGGGCGGCGACGAGGAAGGATGCCGAGGGGGTGGCGGGTGCTGAAATGAGGAACGATCCTTATCTGA CAACTCACCCGACTGGGGTGGCCGCTTCTGTTGCCGCGGCTGCTAGGATTAACCAACAAGCTAATCTCCACGACGACAACGTTTAA
AA sequence Show only first row Show all	>Lus10019001 pacid=23149989 polypeptide=Lus10019001 locus=Lus10019001.g ID=Lus10019001.BGIv1.0 annot-version=v1.0 MSQHQQPQRPQDPVNYGDLFQDVQGELAEKTVAPRDAAMMQTAENKLTGNIKKGGAAAVMQSAADKNERAGFVSHDDVSHVADDLGISATEIDFPAGGSV ITESVGGQVVGKFDKVESKVPATQQGGGAVMIGEALEAAVLTAGKKPVERSDAAAIQAAEVRATSRTTIVPGGIAAAAQSAAILNARATTDEEKTTLADV LSDAKEKLPADRAATRKDAEGVAGAEMRNDPYLTTHPTGVAASVAAAARINQQANLHDDNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22490			Seed maturation protein (.1)		Lus10019001 [exp]	0	1
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10005302 [exp]	15.6	0.8746
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	24.1	0.8692
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016459 [exp]	31.3	0.8606
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10021461 [exp]	38.3	0.8569
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10003792 [exp]	50.9	0.8451
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	56.8	0.8445
					Lus10030905 [exp]	66.7	0.8266
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10014120 [exp]	70.5	0.8348
					Lus10014008 [exp]	146.2	0.7473
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	156.5	0.7995

Compare expression of checked genes

Lus10019001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.