Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14880 459 / 5e-164 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G04940 451 / 1e-160 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 439 / 5e-156 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT3G59760 435 / 1e-152 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G22460 430 / 2e-152 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT2G43750 432 / 7e-152 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT5G28030 424 / 4e-150 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G61440 359 / 1e-123 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G03630 358 / 1e-122 CS26 cysteine synthase 26 (.1) AT1G55880 132 / 4e-35 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015947 [exp] 453 / 2e-161 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 452 / 6e-161 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10025589 [exp] 416 / 9e-146 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10027056 [exp] 416 / 1e-145 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10014765 [exp] 375 / 1e-129 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10004118 [exp] 367 / 2e-127 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10020342 [exp] 362 / 2e-124 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10009521 [exp] 337 / 4e-114 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10036370 [exp] 303 / 5e-102 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048132 [exp] 498 / 5e-179 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.005G048066 [exp] 490 / 5e-176 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048400 [exp] 467 / 9e-167 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035200 [exp] 463 / 2e-165 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 461 / 1e-164 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 456 / 1e-162 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 450 / 3e-160 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048200 [exp] 448 / 1e-159 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.013G127800 [exp] 429 / 1e-150 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.002G160800 [exp] 376 / 3e-130 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10019002 pacid=23149974 polypeptide=Lus10019002 locus=Lus10019002.g ID=Lus10019002.BGIv1.0 annot-version=v1.0 ATGGCGGAGAACTATATAATTAAGAATGACGTCACTGAATTAATAGGAAACACTCCAATGGTATACCTGAACCATGTTGCTGATGGTTGCGAGGCACGAA TTGCCGCCAAGCTAGAGATGATGGAACCTTGTTCTAGTGTCAAAGACAGGATTGCATATAGTATGATAAAAGACGCAGAAGACAAAGGCCTCATATCACC AGGGAAGACGGTGCTGATTGAGCCAACAAGCGGCAACACTGGGATTGGGATGGCATTCATTGCAGCAGGAAAAGGATACAAAGTTATTCTGGTAATGCCA TCCATGGTGAGCCTTGAAAGAAGAATTATCCTTTTAGCCTTTGGAGCTGAGGTTATCCTCACGGATCCAGCCAAGGGCTTTAGAGGTGTTCTGGACAAGT CTGAAGAGATATTGAGCAACACACCTAATGGTTACATGCTAAGGCAATTCGAGAATCCTGCTAATCCAAAGATTCACTATGAAACTACTGGGCCGGAGAT CTGGAAGGCCTCTAGAGGCAAAGTCGATGCTCTGGTTTCTGGTATTGGGACTGGTGGTACCGTGACTGGAGCTGGCCAGTTTCTTAAGGAACAAAACCCT GAAATTAAGGTATATGGTGTAGAGCCAGTTGAAAGTGCTGTCTTGAATGGAGGAAAGCCTGGGATGCATTTGATCCAAGGGATTGGTGCTGGGATCATTC CTGCAGTACTGAACGTGGACTTGCTTGATGAAGTTATTACAATAACAAGTCAAGAAGCAATTGAAACAGCCAGGCAACTGGCTTTGAAAGAAGGGCTGTT GGTAGGGATATCATCGGGTGCTGCAGCTGCTGCTGCAATCAAACTGGGGAAGAGGCCTGAATACAGTGGCAAACTCATTGTGGTGATCTTTCCTAGTGCA GGTGAGCGTTACCTGTCAACTGCATTGTTCGAATCCATTAGGAATGAAGCAGAAAACATGACAATACACCACTGA
AA sequence Show only first row Show all	>Lus10019002 pacid=23149974 polypeptide=Lus10019002 locus=Lus10019002.g ID=Lus10019002.BGIv1.0 annot-version=v1.0 MAENYIIKNDVTELIGNTPMVYLNHVADGCEARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLISPGKTVLIEPTSGNTGIGMAFIAAGKGYKVILVMP SMVSLERRIILLAFGAEVILTDPAKGFRGVLDKSEEILSNTPNGYMLRQFENPANPKIHYETTGPEIWKASRGKVDALVSGIGTGGTVTGAGQFLKEQNP EIKVYGVEPVESAVLNGGKPGMHLIQGIGAGIIPAVLNVDLLDEVITITSQEAIETARQLALKEGLLVGISSGAAAAAAIKLGKRPEYSGKLIVVIFPSA GERYLSTALFESIRNEAENMTIHH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10019002 [exp]	0	1
AT2G23790			Protein of unknown function (D...		Lus10000580 [exp]	1.4	0.9359
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016632 [exp]	9.8	0.8818
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	17.5	0.9139
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	20.9	0.9082
AT3G53210			nodulin MtN21 /EamA-like trans...		Lus10028351 [exp]	22.6	0.8913
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	22.8	0.9153
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	30.0	0.9061
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10020248 [exp]	31.5	0.8582
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	35.5	0.8491
AT5G10530			Concanavalin A-like lectin pro...		Lus10014652 [exp]	38.2	0.8892

Compare expression of checked genes

Lus10019002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.