Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14880 479 / 1e-171 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G22460 453 / 1e-161 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT2G43750 446 / 2e-157 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G59760 444 / 3e-156 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT5G28020 414 / 9e-146 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT3G04940 412 / 4e-145 ATCYSD1 cysteine synthase D1 (.1) AT5G28030 391 / 7e-137 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G61440 366 / 2e-126 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G03630 353 / 8e-121 CS26 cysteine synthase 26 (.1) AT1G55880 107 / 5e-26 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015947 [exp] 566 / 0 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 432 / 6e-153 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 430 / 2e-151 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 429 / 8e-151 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10014765 [exp] 367 / 2e-126 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10020342 [exp] 343 / 8e-117 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10009521 [exp] 323 / 7e-109 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10004118 [exp] 307 / 4e-104 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10036370 [exp] 304 / 2e-102 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048700 [exp] 535 / 0 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 533 / 0 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 530 / 0 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 509 / 0 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G127800 [exp] 446 / 2e-157 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.005G048066 [exp] 441 / 2e-156 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048132 [exp] 439 / 1e-155 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.013G035200 [exp] 427 / 3e-151 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048200 [exp] 401 / 7e-141 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.014G086300 [exp] 380 / 1e-131 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10019003 pacid=23149985 polypeptide=Lus10019003 locus=Lus10019003.g ID=Lus10019003.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGAACATTGGGATTGCTAAGGATGTCACTGAGTTGATTGGTAAAACACCATTGGTATATCTCACCAATGTCGTGGATGGCTGCGTCGCTC GGGTTGCTGCTAAACTAGAGATGATGGAGCCTTGCTCAAGCGTCAAGGATAGGATTGGATATAGTATGATAGCTGATGCCGAGGAGAAGGGTCTTATCAA GCCTGGAGAGAGTGTCCTTATTGAGCCAACAAGTGGGAACACTGGGATAGGGCTGGCATTCATGGCAGCAGCCAAGGGCTACAGACTTATAATTACCATG CCTGCTTCGATGAGTTTGGAGAGAAGAATGGTTCTCCGTGCTTTTGGAGCCGAGCTTGTTCTTACAGATCCAGCAAGAGGTATGAAAGGGGCTGTTCAGA AAGCAGAAGATATCTTGGCAAAGACACCTAATGCTTACATTCTTCAGCAATTTGAAAACCCTGCCAACCCAAAGGTTCATTATGAAACCACTGGGCCGGA AATATGGAAAGGTTCAGCTGGCAAAGTAGATGCCTTTGTGTCGGGTATAGGAACTGGAGGAACAGTAACTGGTGCTGGGAAGTATCTTAAGGAGCAGAAC CCAGATGTAAAGCTTTATGGCGTTGAACCAGTTGAAAGTGCAGTGTTGTCTGGAGGAAAACCTGGCCCGCATAAAATCCAGGGAATTGGTGCTGGCTTCA TCCCTGGAGTCTTGGATGTTGGTTTGCTTGATGAGGTCGTTCAAATATCGAGCGAAGAAGCTATCGAGACAGCAAAAACCCTCGCCTTGAGGGAAGGACT GATGGTAGGAATATCATCTGGTGCAGCCGCAGCTGCTGCTATTAAGATAGCAAAGAGGCCTGAGAATGCTGGAAAGCTCATAGTTGTGGTGTTCCCAAGT TTCGGTGAGCGATACCTCTCATCGATACTCTTCGAGGATGTGAAGCGAGAAGCTGAGAACATGGTTTTCGAGCCTTGA
AA sequence Show only first row Show all	>Lus10019003 pacid=23149985 polypeptide=Lus10019003 locus=Lus10019003.g ID=Lus10019003.BGIv1.0 annot-version=v1.0 MAEENIGIAKDVTELIGKTPLVYLTNVVDGCVARVAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITM PASMSLERRMVLRAFGAELVLTDPARGMKGAVQKAEDILAKTPNAYILQQFENPANPKVHYETTGPEIWKGSAGKVDAFVSGIGTGGTVTGAGKYLKEQN PDVKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVGLLDEVVQISSEEAIETAKTLALREGLMVGISSGAAAAAAIKIAKRPENAGKLIVVVFPS FGERYLSSILFEDVKREAENMVFEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10019003 [exp]	0	1
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	3.6	0.8512
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	5.7	0.8349
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	7.1	0.8250
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021561 [exp]	10.7	0.8127
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10033806 [exp]	12.0	0.7850
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10036484 [exp]	13.5	0.7980
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	18.5	0.7613
AT1G27000			Protein of unknown function (D...		Lus10037210 [exp]	20.6	0.7969
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	21.3	0.7702
AT5G04000			unknown protein		Lus10042034 [exp]	22.4	0.7591

Compare expression of checked genes

Lus10019003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.