Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 416 / 1e-135 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT1G75660 296 / 7e-90 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 238 / 8e-69 AtXRN2, XRN2 exoribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015946 [exp] 692 / 0 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 449 / 2e-149 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10004119 [exp] 432 / 9e-144 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10024327 [exp] 288 / 7e-87 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10012434 [exp] 284 / 5e-85 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 234 / 3e-67 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10020397 [exp] 230 / 2e-65 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013326 [exp] 142 / 1e-35 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10004120 [exp] 105 / 3e-26 AT1G54490 82 / 1e-18 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048900 [exp] 526 / 4e-178 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 487 / 8e-163 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 290 / 4e-87 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 258 / 1e-75 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.013G070200 [exp] 243 / 5e-70 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019004 pacid=23150004 polypeptide=Lus10019004 locus=Lus10019004.g ID=Lus10019004.BGIv1.0 annot-version=v1.0 ATGAGGCTCAGAGCAAAAAGAGAGTCCCAAGAACAACCTCAGGCACCAGTTACAGATAAGGTCAAGCTTGGTGAGCCTGGATACAAAGAAAGATATTATG CTGAAAAATTTGATGCATCAACACCAGAGGAGTTGGAGAAAGTGCGAAAAGATATAGTTTTGAAATACGTAGAAGGCTTGTGTTGGGTATGCCACTACTA CTACCAAGGCGTTTGTTCGTGGCAATGCCTGAAGACATCTGTAAGACAGCTGCTAAGCAAAAGATCGGTCTTCTTGAAACCTTTTGACCAGCTCATGGGA ACTCTACCAGCTGCAAGTTCTAATGCTTTGCCCGAGGAATACAGAAAACTGACGACTGATCCCTCATCAGTATTACAATCGTTCTTCCCTTCTGATTTTG ATATCGATATGAATGGCAAACGCTTTGCCTGGCAGGGTATTGCAAAATTGCCATTCATTGACGAGAGGAAATTGTTCGGTCAAACAAAGAAGCTTGAGAG TACATTAACGGACGAGGAGAGGGTTCGCAACAGTGCCATGCTTGATCTGCTTTACATCCATCCTGTCCATCGTTTGTCTCAGCAAGTTGTCTCTTACTAC CATCAGAACTATCAATTACCTCCTCATGAAAGATTCCTTTGGGCAATCGATCCAAGTGCTAGGATCTTGCTCCCATCGCCTATAAAGGGATTTCCACCTA TAGAGCATAAGCTAGTTTTAAATATTACGTATCTTTCTCCTATGAGCCATAGACACATCCCTGAACCCCCAGCTGGTGTAAAATTTCCCGGAAAGATTGT AAAGGCCGCAGACGTCAAACCATTCCCTATACCATGGCATGAAGACAACAGTGGGCGGCGTCAACAAGGCAGAGAAAGGCATCAGTTACCTGGAGTAATT TCTGGTCCTCAATTGGGAGAAGCAGCTCATCGTCTTGTTAGAAACACTCTCAACATCAGACCAAACAATGGATTGCTTGGACAGCCTCTAGTTCCAAACG GTGCTGGCAATCAAATGGCCAGTAGGAGCAGTAGGCCTTCACCTTATGGTTATGGAAGAGGCTATGGTTATGATCCAAACAATCGTGGTGGTTACTACAA CAACAACCATCAGGAACCAATGAGTGGACCTAAATCTCCTATCCCATCGAATAGTGTGCGAGGATCTGGACACAACTTTAGGCCCCAGGAGAGGTTTCGG AATGTGGAGAAGTTCCGGGACTTGAGGACCGGCGTGTCTTCTTTCGCACTGGAGTCTTCTTTGGCACTGGATGAAAACGTTGGAGTCGAGCCACTTGCAA TTCTACAGCGGGAGCCAAGTTCAAGATATCCTCAAAACTTCAATCATCAGTTTGAGCAAAGCACGAGTCCCCTTCCCTCACCTCCCTCCAAATGGTCCAA TAATATGCCAGATGAAGCATCTGGGAGATATTTTAGACGAGGAGATACAGCCACAAGAAGCGCAAAGGAGAAGCAGCAAGTGAGACATGTCTATCAGATT AAGATGCGAGCAACTCCAGAAGCTTCAAAGACAGTAGCAGATCCGAACCACCAGTAG
AA sequence Show only first row Show all	>Lus10019004 pacid=23150004 polypeptide=Lus10019004 locus=Lus10019004.g ID=Lus10019004.BGIv1.0 annot-version=v1.0 MRLRAKRESQEQPQAPVTDKVKLGEPGYKERYYAEKFDASTPEELEKVRKDIVLKYVEGLCWVCHYYYQGVCSWQCLKTSVRQLLSKRSVFLKPFDQLMG TLPAASSNALPEEYRKLTTDPSSVLQSFFPSDFDIDMNGKRFAWQGIAKLPFIDERKLFGQTKKLESTLTDEERVRNSAMLDLLYIHPVHRLSQQVVSYY HQNYQLPPHERFLWAIDPSARILLPSPIKGFPPIEHKLVLNITYLSPMSHRHIPEPPAGVKFPGKIVKAADVKPFPIPWHEDNSGRRQQGRERHQLPGVI SGPQLGEAAHRLVRNTLNIRPNNGLLGQPLVPNGAGNQMASRSSRPSPYGYGRGYGYDPNNRGGYYNNNHQEPMSGPKSPIPSNSVRGSGHNFRPQERFR NVEKFRDLRTGVSSFALESSLALDENVGVEPLAILQREPSSRYPQNFNHQFEQSTSPLPSPPSKWSNNMPDEASGRYFRRGDTATRSAKEKQQVRHVYQI KMRATPEASKTVADPNHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10019004 [exp]	0	1
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008210 [exp]	10.1	0.8091
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	19.0	0.8042
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10016075 [exp]	19.0	0.7804
AT1G50450			Saccharopine dehydrogenase (....		Lus10014913 [exp]	23.3	0.7909
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	29.7	0.7797
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	30.2	0.7555
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10037766 [exp]	34.5	0.7905
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10032769 [exp]	35.7	0.7714
AT3G09870			SAUR-like auxin-responsive pro...		Lus10001398 [exp]	42.1	0.7756
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	43.0	0.7745

Compare expression of checked genes

Lus10019004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.