Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54500 180 / 2e-57 Rubredoxin-like superfamily protein (.1) AT5G51010 42 / 5e-05 Rubredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015945 [exp] 340 / 2e-120 AT1G54500 182 / 2e-58 Rubredoxin-like superfamily protein (.1) Lus10022430 [exp] 45 / 5e-06 AT5G51010 190 / 8e-63 Rubredoxin-like superfamily protein (.1) Lus10016735 [exp] 44 / 1e-05 AT5G51010 189 / 3e-62 Rubredoxin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049000 [exp] 206 / 2e-67 AT1G54500 184 / 3e-59 Rubredoxin-like superfamily protein (.1) Potri.013G035700 [exp] 206 / 2e-67 AT1G54500 197 / 2e-64 Rubredoxin-like superfamily protein (.1) Potri.015G108100 [exp] 41 / 0.0002 AT5G51010 160 / 5e-51 Rubredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0045 [flax] [poplar] Rubredoxin PF00301 [flax] [poplar] Rubredoxin Rubredoxin
Representative CDS sequence Show only first row Show all	>Lus10019005 pacid=23149958 polypeptide=Lus10019005 locus=Lus10019005.g ID=Lus10019005.BGIv1.0 annot-version=v1.0 ATGGCGTCTGCAGCAACAACTAGACCCACTTTCTCCTTCCATCTCATATCCCAGCAACTAGTCTCCTCACATTCATTACCCAGAACTAGATTCCATTTCT CCGTACCACCACAACCATCAATCTCCCTCTATAATAATCCCCAAAGGATTACCCATTTTGCTCTTTCCTCCATTGATGTATCCAAAGAAGACAAGCCGCC AGCTCCAGACGCTCAAATTACCGAACCAGTTACGCTCCAGGACGAGTCATCTTCTTCCTCCTTCCTGGTAGAAGAAGATGAAGAAGAAACCGAGCAGCAA TTTGACAAGCGAAGGTTGGAAGAGAAATTTGCAGTTCTAAACACGGGAGTGTACGAGTGCAGGTCGTGCGGGTACAAATACGATGAAGCAGTGGGGGATC AGTCTTACCCGGTGCCTCCTGGGCTGCCATTTGACAAGTTGCCAGAGGACTGGAGGTGTCCCACTTGCGGTGCTGCTCAGAGTTTCTTCCAGAGCAAAAG TGTGGAGATCGCCGGGTTTGCACAGAACCAGCAGTATGGGCTTGGAGGCAACACCCTCACTTCTGGGCAGAAGGCTATTTTGATCTACGGAAGTTTGCTC CTCTTCTTTGCTCTCTTCTTGAGTGGCTATTTCCTGCAATGA
AA sequence Show only first row Show all	>Lus10019005 pacid=23149958 polypeptide=Lus10019005 locus=Lus10019005.g ID=Lus10019005.BGIv1.0 annot-version=v1.0 MASAATTRPTFSFHLISQQLVSSHSLPRTRFHFSVPPQPSISLYNNPQRITHFALSSIDVSKEDKPPAPDAQITEPVTLQDESSSSSFLVEEDEEETEQQ FDKRRLEEKFAVLNTGVYECRSCGYKYDEAVGDQSYPVPPGLPFDKLPEDWRCPTCGAAQSFFQSKSVEIAGFAQNQQYGLGGNTLTSGQKAILIYGSLL LFFALFLSGYFLQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	0	1
AT1G54500			Rubredoxin-like superfamily pr...		Lus10015945 [exp]	1.4	0.9572
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	1.7	0.9581
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	2.4	0.9568
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020578 [exp]	3.2	0.9535
AT1G45230			Protein of unknown function (D...		Lus10009756 [exp]	3.5	0.9481
AT3G46630			Protein of unknown function (D...		Lus10024797 [exp]	4.1	0.9339
AT2G26500			cytochrome b6f complex subunit...		Lus10011665 [exp]	4.9	0.9556
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10001369 [exp]	4.9	0.9447
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10002315 [exp]	5.7	0.9433
AT4G13220			unknown protein		Lus10022819 [exp]	6.2	0.9317

Compare expression of checked genes

Lus10019005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.