Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28040 228 / 2e-70 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT3G04930 172 / 2e-49 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1.2) AT4G00390 86 / 4e-18 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 83 / 2e-17 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G25210 82 / 7e-17 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G61730 77 / 2e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 73 / 2e-14 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 73 / 4e-14 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00610 69 / 6e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G44810 67 / 4e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015944 [exp] 479 / 2e-169 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 215 / 2e-65 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004121 [exp] 108 / 5e-28 AT5G28040 93 / 1e-22 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 89 / 2e-19 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 87 / 2e-19 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 83 / 9e-18 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 82 / 5e-17 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 77 / 3e-15 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000807 [exp] 76 / 4e-15 AT4G01260 79 / 1e-16 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261700 [exp] 194 / 8e-58 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 192 / 2e-57 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G293900 [exp] 98 / 2e-22 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 94 / 8e-21 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.007G119800 [exp] 78 / 3e-15 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.004G090900 [exp] 69 / 2e-12 AT5G28040 60 / 7e-10 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.005G075000 [exp] 54 / 6e-08 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10019007 pacid=23149972 polypeptide=Lus10019007 locus=Lus10019007.g ID=Lus10019007.BGIv1.0 annot-version=v1.0 ATGTCCACTGCCGTACAGGACGACGCCGTGTTCGATCATGATCGTAACGACGACGATTCCCCATCCCAGGACGACGACTTCGACGATCTCGAGAATGACG ACTTCCTCGCTGTCGAGGAAGATGATGAGGACCTCAATTTCATCTCCCCTCCCACCCTCGTCACGCCTGCTCCTCCCGTCGCTGTCCCCTCCGCCTCCCT CGTCACCGTCGCTGCCGATCCGCACAAATTCGCGGCGGAGATGTCCAGCAGCGCTGTCCTCCCCGAAGCGAAGCGGCAGCGTACGGAGGCGATGATGATT GTCCCCTTGGATGAGAGGAAGCCTCAGCCGTTGGATAAATCGAGGCAGCTGTTTCAGCGGCTTTGGACTGACGAGGACGAGATCGAGCTCCTCCAAGGCT TCTTGGAGTACACAGCACACCGCGGAGGGATACATTACGACACGGCGATGTTCTATGACCAGATCAAGTCGAAGCTCCAGCTGGATTTCAACAAGAGCCA GCTAGTTGAGAAGCTGAGGCGCCTGAAGAAGAAATATAGGAATGTGTTGGCCAAGATCGATTCAGGGAAAGATTTTTCGTTCAAGAGCCCTCACGATCAG ATCACCTTCGAGATCTCGAGTAAGATCTGGAGCAGCACTGGGAAGCTAGCTGCTGTAGAGGATGGCAATTTGGAGGAGGAAGGAAACCCTAACCTTAACT ACAACAGCATGAATTCTTTCGGTGAGATTAACCAAAAATCCACTCCGACTCCTCAACGGAAACGCTCCCGATCTCGTTCCCTGGCCACTCCTCTCATTCT CGGCCGCTGTGGTGGTGGTGGTTTTAGCGTAGACGACGGTGGGAACCTTAGGGGTAAAGTGGATGATAAGCCAGTCTTGAATCATGGTGTTGCTTCCAAC AATGGCGTTAGCAATAACAGCCATCATCACCATGGCAATGTAAATGTTGGGAGTTTGATTGAGGAGGCAGTGAAGAGTTGCTTGTCCCCATTGTTTAAGG AGTTGCTGAAGAATAAGGCTATGGTGAGCGGTGGTGGGAGGGGGATAGAGAGTTTGGCAATGCTGTCGAATTTTGAGGGAGTGGAGATGATGGGTGATGA GAAGTGGAGGAAGCAACAGATAATGGAGCTGGAGGTATACTCGAAGAGGTTGGAGTTGGTTCAAGATCAGATTAGATCACAGTTGGAGGAGTTGCGCTCC ATATAA
AA sequence Show only first row Show all	>Lus10019007 pacid=23149972 polypeptide=Lus10019007 locus=Lus10019007.g ID=Lus10019007.BGIv1.0 annot-version=v1.0 MSTAVQDDAVFDHDRNDDDSPSQDDDFDDLENDDFLAVEEDDEDLNFISPPTLVTPAPPVAVPSASLVTVAADPHKFAAEMSSSAVLPEAKRQRTEAMMI VPLDERKPQPLDKSRQLFQRLWTDEDEIELLQGFLEYTAHRGGIHYDTAMFYDQIKSKLQLDFNKSQLVEKLRRLKKKYRNVLAKIDSGKDFSFKSPHDQ ITFEISSKIWSSTGKLAAVEDGNLEEEGNPNLNYNSMNSFGEINQKSTPTPQRKRSRSRSLATPLILGRCGGGGFSVDDGGNLRGKVDDKPVLNHGVASN NGVSNNSHHHHGNVNVGSLIEEAVKSCLSPLFKELLKNKAMVSGGGRGIESLAMLSNFEGVEMMGDEKWRKQQIMELEVYSKRLELVQDQIRSQLEELRS I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10019007 [exp]	0	1
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	7.6	0.8295
AT4G35870			early-responsive to dehydratio...		Lus10041862 [exp]	10.0	0.8168
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	12.0	0.8006
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	12.4	0.7995
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	12.5	0.8012
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10040447 [exp]	14.4	0.8047
AT3G27030			unknown protein		Lus10032030 [exp]	14.5	0.7803
					Lus10011573 [exp]	16.7	0.8001
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10027355 [exp]	17.7	0.7928
AT2G25920			unknown protein		Lus10002434 [exp]	18.1	0.7466

Compare expression of checked genes

Lus10019007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.