Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 209 / 8e-64 Serine protease inhibitor (SERPIN) family protein (.1) AT2G25240 198 / 1e-59 Serine protease inhibitor (SERPIN) family protein (.1) AT2G26390 189 / 2e-56 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 189 / 4e-56 Serine protease inhibitor (SERPIN) family protein (.1) AT2G35580 155 / 2e-43 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62170 153 / 3e-42 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT1G64030 146 / 3e-40 ATSRP3 serpin 3 (.1) AT2G14540 144 / 3e-39 ATSRP2 serpin 2 (.1) AT1G64010 92 / 1e-21 Serine protease inhibitor (SERPIN) family protein (.1) AT1G63280 67 / 1e-13 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032600 [exp] 316 / 2e-107 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1) Lus10040926 [exp] 296 / 5e-100 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1) Lus10039336 [exp] 259 / 3e-84 AT2G26390 105 / 2e-25 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032754 [exp] 228 / 3e-71 AT1G47710 487 / 1e-172 Serine protease inhibitor (SERPIN) family protein (.1) Lus10002792 [exp] 224 / 1e-69 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034364 [exp] 202 / 5e-61 AT1G47710 296 / 4e-97 Serine protease inhibitor (SERPIN) family protein (.1) Lus10005089 [exp] 191 / 1e-56 AT1G47710 306 / 2e-101 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034362 [exp] 181 / 1e-53 AT1G47710 274 / 1e-89 Serine protease inhibitor (SERPIN) family protein (.1) Lus10009905 [exp] 142 / 2e-41 AT2G14540 72 / 1e-15 serpin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100900 [exp] 207 / 5e-63 AT1G47710 337 / 2e-113 Serine protease inhibitor (SERPIN) family protein (.1) Potri.014G036000 [exp] 193 / 6e-58 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [flax] [poplar] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Lus10019009 pacid=23152669 polypeptide=Lus10019009 locus=Lus10019009.g ID=Lus10019009.BGIv1.0 annot-version=v1.0 ATGTCTCCTGCTTCACTCGACATCTTGCTCCGTATGGTGGCTTGCGGAGCCGAAGGGCCAACCCTGGATCAGCTGCTAAGTTTCCTTGGTGCCCAAGACA TCGAAGATCTCAATTCCAAAGCTTCGGCAACTATGGAAGCGCTGTGTCAAGCTGTACCACCGAAAAACGAAAGAGAAAGCGAGGCGCCAATTATAAATGG CGCCAACGCGGTTTGGGTGGATCAGAAGTACTTATTGAGTGAATCATTCAAAAAGATCGTAATTGATGTCTACCGGGCCGATACCAACGCCGCCGATTTT CAATTCAAGCCTGGGAAAGCAGTCAAGAAAATCAACGCATGGGCAAAAGAATCAACGAAAGGATGCATCGGCGACATCGTTAACTCTAAAGACATAACCC CAGCCACAATGATTGTCTTGGCGAATGCTCTATACTTCAAAGGTCAGTTTCCTACCTACCTCTTCCCTCGTTCTCACACATCTGACGACGTATTCCACCT CCTCAATGGAACCAACAAGGTCACCGTCCCGTTCATGAACAACTTGGAACTCAACCTACACTTCGCGAGTTTTGATGATTTCAAGGTCCTCGAGCTCCCC TATGAATCGTTGATTTCCCTAGGCGATCAGAAGTACCTCAAATGCTCCATGTACATCTTCCTTCCTCGGGAGCGGAACGGGCTTCCTCACATGCTACGGA AGCACTTTGGCAGCTCGAATCCCGGTGAGGCATTTTTACAAACACTTGGTAAGCTTGAGAGGCAATACATGGGAAAAGTGCACATCCCCAAGTGGAAATT CTCCTTTAGGTGCGAGCCGAAAGAGACGATGCAGAAGTTGGGGCTCACGTTGCCATTTGAGTTTAAAAGGGATTTCGCCAAGATGTTTTGCCAGCGCCTT GATGAGATACCGCCGATGGCTGTTTCTAAGATGATTCAGAGTGTTTCTATTCAAATGGATGAGACAGGTACGGTGGCTGCAGCTGTCACCATATCCACGG AGGTACAGAAGTCACGTCGTTGTCCACACAAAAAAAGACGACCGACGGATGATTTTATTGCAGAGCATCCTTTCATGTTCTTGATAACGGAGAAACGGAG CAAAACTGTCATCTTCGCTGGATCGGTGGTCAATCCTCTGACATGA
AA sequence Show only first row Show all	>Lus10019009 pacid=23152669 polypeptide=Lus10019009 locus=Lus10019009.g ID=Lus10019009.BGIv1.0 annot-version=v1.0 MSPASLDILLRMVACGAEGPTLDQLLSFLGAQDIEDLNSKASATMEALCQAVPPKNERESEAPIINGANAVWVDQKYLLSESFKKIVIDVYRADTNAADF QFKPGKAVKKINAWAKESTKGCIGDIVNSKDITPATMIVLANALYFKGQFPTYLFPRSHTSDDVFHLLNGTNKVTVPFMNNLELNLHFASFDDFKVLELP YESLISLGDQKYLKCSMYIFLPRERNGLPHMLRKHFGSSNPGEAFLQTLGKLERQYMGKVHIPKWKFSFRCEPKETMQKLGLTLPFEFKRDFAKMFCQRL DEIPPMAVSKMIQSVSIQMDETGTVAAAVTISTEVQKSRRCPHKKRRPTDDFIAEHPFMFLITEKRSKTVIFAGSVVNPLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47710			Serine protease inhibitor (SER...		Lus10019009 [exp]	0	1
AT2G29070			Ubiquitin fusion degradation U...		Lus10029298 [exp]	1.0	0.9666
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	2.8	0.9396
					Lus10038978 [exp]	6.7	0.9262
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	7.5	0.9134
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10013316 [exp]	8.1	0.8942
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	10.1	0.9312
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	12.2	0.9059
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10016720 [exp]	12.5	0.9504
					Lus10030774 [exp]	12.6	0.9305
AT4G10265			Wound-responsive family protei...		Lus10031613 [exp]	16.0	0.9082

Compare expression of checked genes

Lus10019009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.