Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78090 310 / 9e-104 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT5G10100 304 / 2e-101 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G35910 302 / 7e-101 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G22590 299 / 2e-99 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G51460 299 / 3e-99 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G39770 297 / 4e-99 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G65140 295 / 4e-98 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G22190 290 / 3e-96 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G22210 283 / 4e-94 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 279 / 6e-92 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039339 [exp] 634 / 0 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10027208 [exp] 317 / 2e-106 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 315 / 1e-104 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10019666 [exp] 305 / 4e-102 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10031146 [exp] 301 / 3e-100 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10024607 [exp] 300 / 1e-99 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032244 [exp] 299 / 3e-99 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031723 [exp] 296 / 3e-98 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10000687 [exp] 247 / 4e-79 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001000 [exp] 459 / 6e-163 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 438 / 2e-154 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.012G126100 [exp] 317 / 2e-106 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 309 / 3e-103 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.007G090900 [exp] 306 / 3e-102 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 305 / 5e-102 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G120500 [exp] 305 / 7e-102 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G094500 [exp] 302 / 9e-101 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G112400 [exp] 298 / 9e-99 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.005G166700 [exp] 221 / 5e-70 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10019010 pacid=23152715 polypeptide=Lus10019010 locus=Lus10019010.g ID=Lus10019010.BGIv1.0 annot-version=v1.0 ATGTTGAAGAGGAATATCTCCAGGATTAACCAAGCAATGGGACTTCAGCGATCTCCTTCTAACAACAAGCAGAAACTTGGACAGGTCAACAGCGACCCTC CTGTAAATAACACCAAGACAATGCCCAGTTCAGGGCTTGTTAGGGCTATTGAAGATGTTAATTATACTTCATGGGTGGGGGAACACCCATCTGCATTGCG ATCGTTTGATCAGATGATGAAGGCTGCGAAAGGGAAGAAGATCATCGTGTTTTTGGACTACGATGGAACCCTCTCCCCTATTGTAGATGATCCTAACTTG GCCTTCATGTCTGAGGAGATGCGTGCAGCTGTACGTGAGGTTGCTAAATGCTTTCCAACTGCTATAATCAGTGGTAGAAGCATAGACAAGGTGAAAGAAT TTGTGCAATTGAGCAATGTATATTATGCTGGGAGCCATGGAATGGACATCATGGCGCCCCCAAGGCCGGTTAAGTCTTGCGACGGTCATTCCCCAACTTT GGTAATGGACAAAAAGGGAACTGAAGTGCTTTTCCAACCTGCAAAGAGATTTTTGCCTACAATTGAGAAGATATTGAAAGAGCTGGAGGAGGAAACAGCA AAAGTGAAAGGCGCCAGGGTGGAGGATAACCGGTTCTGCGTCTCTGTACATTTCCGGCAAGTCAATGATGAGGATTATCCATCTCTAGAGGAGAAAGTTA AGTCTGTGCTGGAAAAATATGCAGACTTTCACTTGTGCTGGGGTAAAAAGGTTATGGAAATAAGGCCAACAATAGAGTGGGACAAAGGTCATGCTGTGGA GTATTTCCTAGAAACATTAGGCCTAAGTAACTCTGACGTTATTCCAGTGTATATCGGGGATGACCGAACTGATGAGGATGCTTTCAAGGTAATACAACGA AGAGGAACAGGGTACCCAATTATCGTAACATCCTGCCCTAAGGAAACCAAGGCATCTCACTCCCTAGTTGATCCATCCGAAGTTTTGACATTTTTGTTGC GGCTAGCAAGGTGGAGGAAGTCGTCTAGCTCAAGTAGATCTCTTAACCAAATCTGGGGGGTAGTCAACTGA
AA sequence Show only first row Show all	>Lus10019010 pacid=23152715 polypeptide=Lus10019010 locus=Lus10019010.g ID=Lus10019010.BGIv1.0 annot-version=v1.0 MLKRNISRINQAMGLQRSPSNNKQKLGQVNSDPPVNNTKTMPSSGLVRAIEDVNYTSWVGEHPSALRSFDQMMKAAKGKKIIVFLDYDGTLSPIVDDPNL AFMSEEMRAAVREVAKCFPTAIISGRSIDKVKEFVQLSNVYYAGSHGMDIMAPPRPVKSCDGHSPTLVMDKKGTEVLFQPAKRFLPTIEKILKELEEETA KVKGARVEDNRFCVSVHFRQVNDEDYPSLEEKVKSVLEKYADFHLCWGKKVMEIRPTIEWDKGHAVEYFLETLGLSNSDVIPVYIGDDRTDEDAFKVIQR RGTGYPIIVTSCPKETKASHSLVDPSEVLTFLLRLARWRKSSSSSRSLNQIWGVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10019010 [exp]	0	1
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10039339 [exp]	3.0	0.7708
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008826 [exp]	6.9	0.6801
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	15.5	0.6658
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Lus10009335 [exp]	15.6	0.7327
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007044 [exp]	20.7	0.6153
AT4G11290			Peroxidase superfamily protein...		Lus10039681 [exp]	25.0	0.6048
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	28.7	0.6092
AT2G40070			unknown protein		Lus10002493 [exp]	35.7	0.5942
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	39.2	0.5872
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	53.0	0.5943

Compare expression of checked genes

Lus10019010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.