Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61700 212 / 4e-66 Plant protein 1589 of unknown function (.1.2) AT2G46420 193 / 7e-59 Plant protein 1589 of unknown function (.1.2) AT3G10250 141 / 3e-39 Plant protein 1589 of unknown function (.1.2) AT5G04090 134 / 1e-36 Plant protein 1589 of unknown function (.1.2) AT3G55240 64 / 6e-13 Plant protein 1589 of unknown function (.1) AT2G29605 66 / 5e-12 Plant protein 1589 of unknown function (.1) AT5G02580 54 / 3e-09 Plant protein 1589 of unknown function (.1.2) AT3G28990 54 / 3e-09 Plant protein 1589 of unknown function (.1) AT1G10657 51 / 4e-08 Plant protein 1589 of unknown function (.1.2.3.4) AT1G49700 53 / 8e-08 Plant protein 1589 of unknown function (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039340 [exp] 578 / 0 AT3G61700 182 / 6e-55 Plant protein 1589 of unknown function (.1.2) Lus10004016 [exp] 152 / 3e-44 AT3G61700 253 / 3e-83 Plant protein 1589 of unknown function (.1.2) Lus10030264 [exp] 154 / 2e-43 AT2G46420 346 / 4e-117 Plant protein 1589 of unknown function (.1.2) Lus10031001 [exp] 135 / 8e-37 AT3G10250 392 / 3e-137 Plant protein 1589 of unknown function (.1.2) Lus10035397 [exp] 135 / 4e-35 AT3G23270 526 / 2e-171 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10025300 [exp] 49 / 3e-07 AT5G02580 115 / 5e-35 Plant protein 1589 of unknown function (.1.2) Lus10024432 [exp] 48 / 5e-07 AT5G02580 112 / 1e-33 Plant protein 1589 of unknown function (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169900 [exp] 212 / 5e-66 AT2G46420 500 / 1e-178 Plant protein 1589 of unknown function (.1.2) Potri.014G097800 [exp] 211 / 1e-65 AT2G46420 503 / 5e-180 Plant protein 1589 of unknown function (.1.2) Potri.015G019500 [exp] 143 / 4e-40 AT3G61700 161 / 1e-46 Plant protein 1589 of unknown function (.1.2) Potri.012G001700 [exp] 143 / 5e-40 AT2G46420 165 / 3e-48 Plant protein 1589 of unknown function (.1.2) Potri.006G041200 [exp] 137 / 1e-37 AT3G10250 396 / 4e-139 Plant protein 1589 of unknown function (.1.2) Potri.016G038100 [exp] 134 / 1e-36 AT3G10250 381 / 5e-133 Plant protein 1589 of unknown function (.1.2) Potri.015G014550 [exp] 102 / 5e-24 AT3G10250 92 / 2e-20 Plant protein 1589 of unknown function (.1.2) Potri.012G001900 [exp] 91 / 1e-20 AT3G61700 82 / 2e-17 Plant protein 1589 of unknown function (.1.2) Potri.010G042300 [exp] 60 / 3e-11 AT1G10657 119 / 1e-36 Plant protein 1589 of unknown function (.1.2.3.4) Potri.008G189100 [exp] 59 / 3e-11 AT1G10657 122 / 8e-38 Plant protein 1589 of unknown function (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09713 [flax] [poplar] A_thal_3526 Plant protein 1589 of unknown function (A_thal_3526)
Representative CDS sequence Show only first row Show all	>Lus10019011 pacid=23152705 polypeptide=Lus10019011 locus=Lus10019011.g ID=Lus10019011.BGIv1.0 annot-version=v1.0 ATGGATTCATCAGCTGCTCCAACAACGAATCGCCAGTACAACAACAAACAAGAAAATGGTAGGACTACTGTGGATTCTGATCCTATCTCAGCTCCTACAG GCAATGTCAGGAAAATCACCCGTCAAGATATTGAAACGGTCCAGAATTTGATTGAGAGGTGTCTGCAACTGTATATGAATAAGAACGATGTAGTGAAAAC TCTGTTGGAGCAAGCTAGGATTGAGCCTGGATTTACAAGCCTAATATGGCATAAGTTGGAAGATGAGAATGCTGAGTTTTTCAAGGCCTACTATGTGAGG TTAACTCTCAAAGAACAGATCGACCAGTTCAATCATTTACTTGAGCGTCAATGCCAGTTGATGAATTATCCTCCGTCTCATCAGAATGGGGTTGCACAAA ATGCCTGTGCAGTTACCAGTTTACCTGCCGAACATAGTATCTTGCACCAGTCTGGGGTCCCATCAGCTGTTCATCTGGACTCTGGAGTGGCGAATGGAAT TCCTGCCTCAGGAAGTTTCCACCAATTGCAGCTGAACCCTCAAAAAGAGATGATGTCGGAAGGATATGCTACTGTGACAACACTACCCGTCTCACTAATG GGGACCGAGATGACAACTAATCCTCCATCAGTTACTTCCAACGGCCGATACTCTCTCGCACCAGCAACAAATATGGATTCTTTAGTACCTAACTCTCCCT ATGCAGCAGCACAATTTCTGCCTCATGATTTGCATGCTGGAATTGATGGTGGCGGAAGGGACTACTGCGGTATACCTGTTCATCATTCGTTCCCCCGTGT TCCCAGCTGGAACTTAAGCTTCCCAGACTTTGCAAGCATCGGAGAAAATGGTCATCTGGAGAATTACTCCGGTTCGGAGATGCTGGCAGATTCTACAGGG GAAGAACATGACATGGTTGAAGAGTTTTTCGTTGATTCCGATCCTCCTTTGAGCCCTCGAGCAGAAGAGGAGAGACCTGGAGCCGGGAGTTCGTGA
AA sequence Show only first row Show all	>Lus10019011 pacid=23152705 polypeptide=Lus10019011 locus=Lus10019011.g ID=Lus10019011.BGIv1.0 annot-version=v1.0 MDSSAAPTTNRQYNNKQENGRTTVDSDPISAPTGNVRKITRQDIETVQNLIERCLQLYMNKNDVVKTLLEQARIEPGFTSLIWHKLEDENAEFFKAYYVR LTLKEQIDQFNHLLERQCQLMNYPPSHQNGVAQNACAVTSLPAEHSILHQSGVPSAVHLDSGVANGIPASGSFHQLQLNPQKEMMSEGYATVTTLPVSLM GTEMTTNPPSVTSNGRYSLAPATNMDSLVPNSPYAAAQFLPHDLHAGIDGGGRDYCGIPVHHSFPRVPSWNLSFPDFASIGENGHLENYSGSEMLADSTG EEHDMVEEFFVDSDPPLSPRAEEERPGAGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	0	1
AT2G41670			P-loop containing nucleoside t...		Lus10031060 [exp]	6.5	0.8992
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	7.5	0.9279
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	7.5	0.9149
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10010551 [exp]	8.1	0.9053
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10007953 [exp]	9.9	0.8776
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	9.9	0.9118
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	11.1	0.9163
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10040332 [exp]	11.4	0.9167
AT4G37190			unknown protein		Lus10001001 [exp]	13.3	0.8789
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	14.5	0.8804

Compare expression of checked genes

Lus10019011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.