Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53140 474 / 1e-167 Protein phosphatase 2C family protein (.1) AT4G31750 355 / 3e-122 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 355 / 1e-121 Protein phosphatase 2C family protein (.1) AT5G24940 351 / 2e-118 Protein phosphatase 2C family protein (.1) AT1G43900 303 / 5e-101 Protein phosphatase 2C family protein (.1) AT1G34750 214 / 3e-67 Protein phosphatase 2C family protein (.1) AT1G78200 211 / 3e-66 Protein phosphatase 2C family protein (.1.2) AT2G20630 199 / 1e-61 PIA1 PP2C induced by AVRRPM1 (.1.2) AT4G28400 197 / 9e-61 Protein phosphatase 2C family protein (.1) AT1G22280 188 / 2e-57 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039341 [exp] 715 / 0 AT5G53140 444 / 1e-154 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 500 / 3e-179 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 350 / 6e-120 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 342 / 2e-117 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 328 / 2e-112 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 327 / 6e-112 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10029745 [exp] 305 / 7e-99 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 299 / 2e-97 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 201 / 5e-62 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G019200 [exp] 501 / 3e-179 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 496 / 4e-177 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 352 / 4e-121 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 350 / 3e-120 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G186001 [exp] 320 / 8e-109 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 320 / 1e-108 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 208 / 4e-65 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 202 / 6e-63 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 197 / 8e-61 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 186 / 4e-56 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10019012 pacid=23152657 polypeptide=Lus10019012 locus=Lus10019012.g ID=Lus10019012.BGIv1.0 annot-version=v1.0 ATGGTGGTTGGCAGAAGCTGCCTAAGAAGTGTGGTTGTTCAAGCCGTGCTACTCTCTCGAACAAGGCTGCTCACCAGTAACATTGCGAGGAGGAGTTCTT CGCCTGCTGTTGGCCTTCGCTTGATTAATAACAATACGTGGAGTTCTTCTTTTTTCCCTGTTCGTACAATCATGATGGTGGATTCTGAATCGGCGGCCGC CCCTGCGAAATCGGGACAAGCAGTCGGGGGTTTGCAGGTGGAGAAAGAAGACGGGGTTGGATATGTCAGCGGAGGGCATAAAAGTGAAGATGGGAAATTG AGCTGTGGTTATGCAAGTTTCAGAGGGAAGAGAGCAACCATGGAGGACTTCTATGATATCAAAACTACAAAGATCAATGAGAAACCAGTCTGCATGTTTG GAATATTTGATGGTCACGGTGGTTCTCGGGCATCCGAATATTTAAAGCAACACCTATTTGATAATGTATTAAAGCATCCACAATTCATGACAGATACCAA ATCAGCTATAAGTGCAACATACCAACAGACCGATGCCGACTTTTTGGAATCTGAAAAGGACACGTACAGAGATGATGGTTCTACTGCTTCAACAGCAGTC CTTGTAGGCGACCATCTGTATGTTGCCAATGTTGGAGATTCACGAACTGTGGTATCCAAGGCTGGAAAAGCAATTGCTCTCTCAGAGGATCATAAACCTA ATAGAAGTGACGAGCGGAAGAGAATTGAAAGTGCTGGAGGAGTAGTGATGTGGGCAGGCACTTGGAGGGTAGGAGGTGTCTTGGCTATGTCACGTGCCTT CGGTAACCGTATGTTAAAGCAATACGTTGTTGCAGAACCCGAGATCCAGGATCTGAAGTTAGACGACGAGTGCGAACTGCTAGTCCTTGCAAGTGACGGA TTATGGGACGTTGTACCAAATGAAGATGCCATCTCACTTGCTCGTTCGGAGGAAGAACCTGAGGCAGCAGCGAAGAAGCTCGTGGAGACTGCTTTTACAA AGGGCAGCGCCGACAACATTACGTGCATCGTCGTGAAAATGCACCGTGGTAATAAGGTGGCGGCTAAGGCAGATTCGCCACCTAATCCTCCTCCCAAAGA TAACGAGAAGGTTACTTGA
AA sequence Show only first row Show all	>Lus10019012 pacid=23152657 polypeptide=Lus10019012 locus=Lus10019012.g ID=Lus10019012.BGIv1.0 annot-version=v1.0 MVVGRSCLRSVVVQAVLLSRTRLLTSNIARRSSSPAVGLRLINNNTWSSSFFPVRTIMMVDSESAAAPAKSGQAVGGLQVEKEDGVGYVSGGHKSEDGKL SCGYASFRGKRATMEDFYDIKTTKINEKPVCMFGIFDGHGGSRASEYLKQHLFDNVLKHPQFMTDTKSAISATYQQTDADFLESEKDTYRDDGSTASTAV LVGDHLYVANVGDSRTVVSKAGKAIALSEDHKPNRSDERKRIESAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQYVVAEPEIQDLKLDDECELLVLASDG LWDVVPNEDAISLARSEEEPEAAAKKLVETAFTKGSADNITCIVVKMHRGNKVAAKADSPPNPPPKDNEKVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	0	1
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	1.7	0.8842
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	2.2	0.8685
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	2.8	0.8589
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	2.8	0.8819
AT4G35360			Uncharacterised conserved prot...		Lus10013846 [exp]	3.3	0.8517
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	4.2	0.8620
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	4.5	0.8748
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	5.2	0.8761
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	5.9	0.8593
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	7.1	0.8571

Compare expression of checked genes

Lus10019012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.