Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09680 208 / 2e-67 RLF reduced lateral root formation (.1.2) AT5G53560 62 / 4e-12 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT2G32720 61 / 1e-11 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 58 / 2e-10 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT1G26340 56 / 6e-10 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT2G46650 54 / 3e-09 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT3G61580 55 / 1e-08 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT1G77760 55 / 2e-08 GNR1, NIA1 nitrate reductase 1 (.1) AT1G37130 54 / 5e-08 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT2G46210 51 / 3e-07 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039342 [exp] 327 / 5e-113 AT5G09680 253 / 8e-85 reduced lateral root formation (.1.2) Lus10000651 [exp] 60 / 5e-11 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10011858 [exp] 60 / 6e-11 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022794 [exp] 59 / 9e-11 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10036973 [exp] 59 / 1e-10 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10008838 [exp] 57 / 4e-10 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 57 / 7e-10 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10043137 [exp] 56 / 2e-09 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10032612 [exp] 56 / 2e-09 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263800 [exp] 210 / 6e-68 AT5G09680 258 / 1e-87 reduced lateral root formation (.1.2) Potri.002G242500 [exp] 61 / 2e-11 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 54 / 4e-09 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.005G172400 [exp] 56 / 1e-08 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 56 / 1e-08 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.002G165800 [exp] 55 / 2e-08 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.017G054300 [exp] 52 / 2e-08 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 52 / 2e-08 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.014G019200 [exp] 52 / 2e-08 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) Potri.015G007600 [exp] 50 / 7e-08 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10019013 pacid=23152679 polypeptide=Lus10019013 locus=Lus10019013.g ID=Lus10019013.BGIv1.0 annot-version=v1.0 ATGAAAGGGAAAAAAACGGTCAGCCAGGCAGGAAGAGAAAATCCGTACCAGAATAAAGTTCACTTGCAGAATAAGAAGAAACGAACTTTGATCGGAGGAA AAGTAGTCAAGGAGGCTCTACAGCAGCGTCAATCCAAAAGGGAGAGCATTTATCGGTTAACCTTGCCTCCAGACGTACCTTCGTCAGTCGATGGGGCTGA TGTTAAGGAAGAGAAGACGCTGGCTTCAGAGATTGGTGGGATAACGATCAAAGATGAAAAGTCAAATGGATTGGATAGCAGCATTGCATCAAGCTCTAAG GAGGAGAAAGTTTCTGGGACACTGTCATTCACTGTTGTTGATAAATCGTCACAGCAACAACAACAACAGCCGAGTTCAAGACAAGTAGCATCATCCAGAA CTGCTGAGACTTCTGCTAAGATTAAGCAACCTGCTAAGAAGCCTGTAGCCAGGGCGAAGGTACCGTTTGAGAAGGGGTACAGCCAAATGGACTGGCTTAA CCTAACTCGAACACATCCCGATCTTGCAGGCTTAAAAGGAGAATCGAATAGGAGATTGATTCCGTTGAGTGAAGTTAAACAACACCGGGCAGAAGGTTCT ATGTGGACGGTACTGAAAGGTCGTGTATACAATTTGACTCCATACATGAAGTTTCATCCTGGAGGTGAGGATATGCTCTTGAAGGCAGTTGGCAAGGACT GTACAGCTTTATTCAATGGTTATATGATTGATTGTCTTGTGTTGAAATCCTTAAGCTTTGATTCCCAGATAAATATCACGCCTGGGTCAACGCAGAATTC TTAA
AA sequence Show only first row Show all	>Lus10019013 pacid=23152679 polypeptide=Lus10019013 locus=Lus10019013.g ID=Lus10019013.BGIv1.0 annot-version=v1.0 MKGKKTVSQAGRENPYQNKVHLQNKKKRTLIGGKVVKEALQQRQSKRESIYRLTLPPDVPSSVDGADVKEEKTLASEIGGITIKDEKSNGLDSSIASSSK EEKVSGTLSFTVVDKSSQQQQQQPSSRQVASSRTAETSAKIKQPAKKPVARAKVPFEKGYSQMDWLNLTRTHPDLAGLKGESNRRLIPLSEVKQHRAEGS MWTVLKGRVYNLTPYMKFHPGGEDMLLKAVGKDCTALFNGYMIDCLVLKSLSFDSQINITPGSTQNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09680		RLF	reduced lateral root formation...		Lus10019013 [exp]	0	1
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	2.0	0.8367
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10028251 [exp]	5.9	0.8093
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033209 [exp]	7.7	0.7729
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	14.7	0.7496
AT1G01770			unknown protein		Lus10036349 [exp]	19.4	0.7878
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10031022 [exp]	23.2	0.7840
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	25.8	0.8107
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	25.9	0.8071
AT1G12400			Nucleotide excision repair, TF...		Lus10006998 [exp]	30.7	0.8067
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	31.1	0.7800

Compare expression of checked genes

Lus10019013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.