Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53130 1058 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT4G01010 840 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT1G01340 838 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT2G46430 802 / 0 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT4G30560 747 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 735 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 734 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G19780 711 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 702 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G28260 686 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003395 [exp] 2375 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 1169 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10038815 [exp] 1073 / 0 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10036260 [exp] 727 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10022155 [exp] 724 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 715 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 714 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10021461 [exp] 704 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10037394 [exp] 674 / 0 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002200 [exp] 1139 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 1137 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.014G097900 [exp] 887 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.002G170000 [exp] 883 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G106100 [exp] 752 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.009G010700 [exp] 707 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.003G183000 [exp] 698 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 697 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G097600 [exp] 674 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 648 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019014 pacid=23152652 polypeptide=Lus10019014 locus=Lus10019014.g ID=Lus10019014.BGIv1.0 annot-version=v1.0 ATGAATTATCCACCAGAGAAGTTTGTGAAGTTTCAGGATTGGAGATCAGACAAAGTCTCCGAATCAGATTATTCTTCCACGAATGGGAGGTTTAGAACGA AGATAAACTCCTTCTCTGATAAGTTCAGGAGGAGGTTGGAATCTGGTTCAGAAAGCATCAGTAGGGTTAGAAAGTCGTGGAAATCATACTCCTTCAATGG TGAAAGTACTAGTACTAGCAGTGGTATAGATGGTTCTTGTTCAAGCAAGAAGATCCTTGACCCTCAGGGAGCTTTCCTTCAGAAATGGAACAAGATATTT GTGTTATCCTGTTTCATTGCTGTCTCCTTGGACCCATTGTTCTTCTACGTCCCAGTAATCGACGACAAAAACAAGTGCCTTGACCTGGACGATAAGATGC AGATAACTGCCAGCGTACTTAGGTCCTTCACCGATATATTCTACATACTCCACATTGTTTTCCAGTTCCGCACCGGCTTCATTGCTCCTTCTTCCCGTGT TTTTGGGAGAGGTGTCTTGGTTCAGGACAGTTGGGCGATTGCGAAAAGATACATGCTTTCGTACTTCTTGATCGACGTCCTTGCGTTGCTGCCATTGCCA CAGATGGTGATTCTAATCATCATTCCAAGGCTGCGAGGGTCGAGAACACTCAACACCAAAAACCTGTTGAAGTTTGTTGTAGTCCTTCAGTATCTGCCAA GGATTATTCGGGTTTATCCATTGTATATGGAAGTCACAAAGACCTCCGGAATCCTCACCGAAACTGCTTGGGCCGGAGCTGCATTCAATCTGTTCCTTTA CATGCTTGCTAGTCACGTGCTGGGAGCATTTTGGTACTTGTTCTCTGTTGAAAGACTGACAGTATGCTGGAGGAAAGCTTGCGACAAAATCTCATGTGAT CGGGCTATACTGTATTGTGATGGTCCTGGAGGCGACAAGAACTTCTTCAACGCTTCTTGTCCTATTTCTCCAGAGAATGCAGATGTATTCAATTTCGGTA TATTCCTCGATGCTCTTCAGTCTGGAGTTGTGCAATCTCATGACTTCCCGAAGAAACTCTTTTACTGTTTCTGGTGGGGGCTTCGCAATCTTAGTTCTCT TGGTCAGAATCTTGCAACTAGCACCTTTGTCTGGGAAATCTGTTTCTCCGTGGCCATTTCTATATTCGGACTAGTGTTGTTCTCGTTCCTCATCGGGAAT ATGCAGACATACTTGCAATCCACAACTACTAGATTGGAAGAAATGAGAGTGAAGAGGCGAGACGCGGAGCAATGGATGTCCCATCGGATGCTTCCGGATA ATCTGAGGGAGCGGATCAGGCGACACGAGCAGTACAAGTGGCAAGAAACTAGAGGAGTTGACGAAGAGAAGTTGGTACACAATCTTCCCAAGGACATTCG GAGGGACATCAAACGTCATCTCTGCTTAGCGCTTCTTATGAGAGTGCCGATGTTCGAAAAGATGGACGAACAGCTGCTGGACGCAATGTGTGACCGTCTC AAACCAGCGCTATACACGGAAGAAAGCTACATCGTTCGTGAGGGAGATCCAGTCGACGAGATGCTCTTCGTTATGCGAGGAAAGCTCCTAACAATGACCA CGAACGGAGGAAGGACAGGGTTTTTCAACTCGGAGTATCTCAAGGCAGGCGATTTCTGCGGTGAGGAGCTGCTGACATGGGCGCTGGATCCCCACACTTC GTCGAACCTTCCCATCTCGACCAGAACGGTTCGTACGATAACCGAAGTGGAAGCGTTTGCACTGACGGCCGAGGACTTGAAGTTCGTGGCTTCGCAGTTC CGCCGGCTTCACAGCAAGCAGATACGCCACACGTTCAGATTCTATTCGCAGCAGTGGCGGACTTGGGCCGCTTGCTTCATACAAGCTGCTTGGCGACGGT ACAGTAAGAAGAAGCTGGAGGAATCGTTGAGGCAAGAAGAGGACAGGCTGCAGGATGCGTTGGCTAAGGCGAGCGGGAACTCTCCTAGTCTCGGTGCGAC TATATACGCGTCGAGGTTTGCTGCCAATGCGTTGAGGCTACTGAGGAGGAACTCGTCGAGAAAGATGCGGGTCCCGGAGAGGGTTCCTCCTATGTTGTTG CAGAAGCCGGCTGAGCCAGATTTTACTGCCGATGAACGGACCTTCGACCCGAGGGAATCGCTGGTTCGGAGGTGGCACTTGGTATTGCTGGTAACAAGCG GAGCTGCTGTGCTGATAGATCCTCTCTTTCTTTACATCCTACGAATCAACAACCACCGCACTAGTACTACTAAGAACGAGAAATTTATGATAGGGTTCGA CAAAACTTTGCTGATTTCTGCAACCACGCTCCGCTCCACTGCTGACGTTTTCTGTGGCCTGCTGCACGTCTTTTTCAAATTCCGCACAGCTTTCCCTGCT CCTTCTTCAAGAGTGTTCAGCCGTGTTGAACTAGTTCACGACTCATCTGCAATTGCTCGCAGATACTTCCCTTCCTTTCTCCTCGTTGACTTCCTTGCCC TCCTTCCCCTGCCTCAGGTGGTTGTAGTTGTAGGTTTGATTTCCAGAGAGGCCATGAGAACCAAACTGTTGACACCCACTATAACTTCGCTGCACCTGGT GCTTTCTTTGCAATTGGTGCCAAGGCTGCTGAGATTCTACCAGCTATACCAAGATGTGATCAAGTCTTCATACGCAATCCGAAAAGCTGCACTTGTGAGG ACTGCCTTCACCGTCTTTCTTTACATCACTGCTGCTCATGCAGTGGGAGCATTCTGGTACTCATCTTCCATACGCAGAGAAATGGATTGCTGGCAATTAG CCTGCAAAAATCATGCTAGATGTGATTACATTGCACTGTTGACCTTTGGCAATGACAGACCGCCTCCTCAGATGGATTACTCGTCATTTCTGAATCGGAC TTGTCCCAAAGGAGGTGCGGAATCGAGTTTCGATTATGGGATGTTTGCTGATGCTGTTAAGTCTGGTGTGCTGGAATCTGCAAATTTCGACGAGAAGTTG CTCTACAGCTTTTGGTGGGGTCTGCAAAGTCTGAGCACCTTGGGTCAGAACGTAAAACCAAGCATCAACAGTCTGGAGATATGTTTTGCACTGTGCATTT TCATTGCTGGGTTGCTGTTATTTTCGCAAGTCATCGGTATCATACAGACAAGGATGCTGACATCGACGATTAGGATTGAGGAGATGAAAATGAAATGGGA AGATGTGGAGGGATGGATGTCTTCCCATTTCATCCCACACGAACTAAAGAGGCGCCTGAGGCGACATCAAGAGTACAGATGGCGTACGGACCAAGGAGTC GATTTCAACCACGTACTAGATAATGTTCCAAAGGACCTCCGAAGGGATGTCAAGCGCCATCTTTGGCTGCCGTTGCTCATGAGAGTGCCAATGTTCGAAG AGATGGATGAACAGCTACTAGATGCAATGTGTGACCGTCTCAAACCAGCACTATACATAGAGGAAAGCCACATTGTTCGTGAGGGAGATCCAGTGGATGA GATGCTCTTCGTTATGCGAGGAAAGCTCCTGACAACAACCACGGACGGAGGAAGGACAGGGTTTTTCAACTCGGTGTACCTCAAGGCAGGCGATTTCTGC GGCGAGGAGCTTCTGACATGGGCGCTGGATCCTCACTCTTCGTCGTACCTCCCTAACTCGACCAGAACAGTTCGTACGATAACCGAAGTAGAAGCATTTG CACTAACAGCGGAGGACTTGAAGTTCGTGGCTTTGCAGTTTCGTAGGCTTCACAGCAAGCAGATACAGCACACGTTCAGATTCTATTCGCAACAGTGGCG GACTTGGGCTGCTTGTTTCATACAAGCTGCCTGGCGACGATACAGAAAGAAGAAGCTTGAAGAAGCAATGAGGCAAAAAGAGGACAGGCTACAGGATGCA TTGGCTAAGGCGAGCAGTAGCGGGAACTCTCCTAGCCTTGGTGCAACAAAATACGCATCGAGGGTTGGTGTCAATAGGCAGGCGATTTCTGCGGCGAGGA GCTTCTGA
AA sequence Show only first row Show all	>Lus10019014 pacid=23152652 polypeptide=Lus10019014 locus=Lus10019014.g ID=Lus10019014.BGIv1.0 annot-version=v1.0 MNYPPEKFVKFQDWRSDKVSESDYSSTNGRFRTKINSFSDKFRRRLESGSESISRVRKSWKSYSFNGESTSTSSGIDGSCSSKKILDPQGAFLQKWNKIF VLSCFIAVSLDPLFFYVPVIDDKNKCLDLDDKMQITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVQDSWAIAKRYMLSYFLIDVLALLPLP QMVILIIIPRLRGSRTLNTKNLLKFVVVLQYLPRIIRVYPLYMEVTKTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSVERLTVCWRKACDKISCD RAILYCDGPGGDKNFFNASCPISPENADVFNFGIFLDALQSGVVQSHDFPKKLFYCFWWGLRNLSSLGQNLATSTFVWEICFSVAISIFGLVLFSFLIGN MQTYLQSTTTRLEEMRVKRRDAEQWMSHRMLPDNLRERIRRHEQYKWQETRGVDEEKLVHNLPKDIRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRL KPALYTEESYIVREGDPVDEMLFVMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHTSSNLPISTRTVRTITEVEAFALTAEDLKFVASQF RRLHSKQIRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLRQEEDRLQDALAKASGNSPSLGATIYASRFAANALRLLRRNSSRKMRVPERVPPMLL QKPAEPDFTADERTFDPRESLVRRWHLVLLVTSGAAVLIDPLFLYILRINNHRTSTTKNEKFMIGFDKTLLISATTLRSTADVFCGLLHVFFKFRTAFPA PSSRVFSRVELVHDSSAIARRYFPSFLLVDFLALLPLPQVVVVVGLISREAMRTKLLTPTITSLHLVLSLQLVPRLLRFYQLYQDVIKSSYAIRKAALVR TAFTVFLYITAAHAVGAFWYSSSIRREMDCWQLACKNHARCDYIALLTFGNDRPPPQMDYSSFLNRTCPKGGAESSFDYGMFADAVKSGVLESANFDEKL LYSFWWGLQSLSTLGQNVKPSINSLEICFALCIFIAGLLLFSQVIGIIQTRMLTSTIRIEEMKMKWEDVEGWMSSHFIPHELKRRLRRHQEYRWRTDQGV DFNHVLDNVPKDLRRDVKRHLWLPLLMRVPMFEEMDEQLLDAMCDRLKPALYIEESHIVREGDPVDEMLFVMRGKLLTTTTDGGRTGFFNSVYLKAGDFC GEELLTWALDPHSSSYLPNSTRTVRTITEVEAFALTAEDLKFVALQFRRLHSKQIQHTFRFYSQQWRTWAACFIQAAWRRYRKKKLEEAMRQKEDRLQDA LAKASSSGNSPSLGATKYASRVGVNRQAISAARSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	1.0	0.8623
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	2.4	0.8063
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	6.2	0.8007
					Lus10028245 [exp]	6.3	0.7751
AT1G14560			Mitochondrial substrate carrie...		Lus10013527 [exp]	7.2	0.7137
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	7.3	0.7528
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	12.0	0.7044
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	12.4	0.7556
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	13.3	0.7359
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	15.9	0.7318

Compare expression of checked genes

Lus10019014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.