Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53120 572 / 0 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6) AT1G23820 421 / 2e-147 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 409 / 3e-143 SPDS2 spermidine synthase 2 (.1) AT5G19530 110 / 2e-27 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G04610 43 / 0.0003 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003398 [exp] 706 / 0 AT5G53120 563 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10029169 [exp] 420 / 2e-147 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 416 / 4e-146 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10030629 [exp] 410 / 1e-143 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10012996 [exp] 402 / 9e-140 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2) Lus10030861 [exp] 391 / 5e-136 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10018259 [exp] 327 / 1e-111 AT1G23820 374 / 6e-130 spermidine synthase 1 (.1.2) Lus10040649 [exp] 151 / 9e-44 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2) Lus10004913 [exp] 118 / 4e-30 AT5G19530 441 / 2e-156 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002600 [exp] 599 / 0 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 576 / 0 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.010G094600 [exp] 421 / 1e-147 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 413 / 7e-145 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.010G089200 [exp] 106 / 1e-25 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 100 / 1e-23 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 99 / 3e-23 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10019016 pacid=23152686 polypeptide=Lus10019016 locus=Lus10019016.g ID=Lus10019016.BGIv1.0 annot-version=v1.0 ATGGAGGGAGACGCAGGAAGAGATTTGGGATGCCAGAAGATTATGGATGGGAAGGCGAGTAATGGAAATGGGAACGGCTCAGAGAAGGCTATCCCTTCCT GTTGTCAGAAAGCCATGGCCTTTGCTTCAGACCTTGGTCCAAAATGCCACTCCACCGTTGTTTCTGGTTGGTTCTCTGAATCCCAATCAGGCAAAGCTGG GAAAAAAGTTGTTTACTTTAACAATCCTATGTGGCCTGGAGAAGCTCACTCTTTGGAAGTGGAGGAAATTCTGTTCGAGGGGAAGTCCGAATACCAAGAG GTTTTGGTTTTTCAGTCGGCCTCTTACGGTAAAGTGCTTGTTCTCGATGGCATTGTTCAACTGACAGAGAAAGACGAATGCGCATACCAGGAAATGATAG CTCATCTTCCACTCTGTTCGATTCCATCCCCAAAAGCAGTCCTGGTAGTTGGGGGTGGTGATGGAGGTGTCCTGAGGGAAATCTCTCGTCATAGTTCAGT GGAGACGATCGACATATGTGAAATAGATAGGATGGTTATAGATGTGAGTAAGAAGTTCTTCCCTGAGTTAGCTGTCGGATTCGAAGATCCACGTGTCCAT CTCCACGTTGGTGACGCTGTGGAATTTCTCCAGCGTGCTCCTAGAGGAAAGTATGATGCCATCATTGTCGATTCTTCGGACCCTGTTGGCCCTGCCCAAG AGCTTGTAGAGAAGCCGTTTTTCGATACATTAGCTACGGCACTGAGGCCTGGCGGGGTCCTCTGCAACATGGCCGAGAGTATGTGGCTTCACACGCATTT GATTGAAGACATGATCTCAATCTGTCGAGAGACATTCAAGGGTTCTGTTCACTATGCTTGGGCTAGTGTTCCAACCTATCCAAGTGGGGTGATCGGATTC GTGCTGTGTTCGACAGAAGGGCCTGCTGTTGACTTCTTGAACCCGGTCAACCCGATCGAGGAGTTGGAAGGAGCTGGGAAGCATAAGAGGGAGCTTAGGT TCTATAACTCGGAGATGCACAGAGCTGCATTTGCTTTGCCAAACTTCTTGAAGAGGGAGGTGAGCTTGTTTCACGATGCTCCGGCTAAAGGGATATCCTC CTAG
AA sequence Show only first row Show all	>Lus10019016 pacid=23152686 polypeptide=Lus10019016 locus=Lus10019016.g ID=Lus10019016.BGIv1.0 annot-version=v1.0 MEGDAGRDLGCQKIMDGKASNGNGNGSEKAIPSCCQKAMAFASDLGPKCHSTVVSGWFSESQSGKAGKKVVYFNNPMWPGEAHSLEVEEILFEGKSEYQE VLVFQSASYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKAVLVVGGGDGGVLREISRHSSVETIDICEIDRMVIDVSKKFFPELAVGFEDPRVH LHVGDAVEFLQRAPRGKYDAIIVDSSDPVGPAQELVEKPFFDTLATALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGVIGF VLCSTEGPAVDFLNPVNPIEELEGAGKHKRELRFYNSEMHRAAFALPNFLKREVSLFHDAPAKGISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10019016 [exp]	0	1
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	4.0	0.8680
AT2G46080			unknown protein		Lus10036385 [exp]	7.6	0.8673
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10043428 [exp]	14.2	0.8143
AT5G11680			unknown protein		Lus10027000 [exp]	23.7	0.8519
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	24.4	0.8367
AT4G19510			Disease resistance protein (TI...		Lus10002250 [exp]	28.9	0.8594
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	33.2	0.8418
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	37.5	0.8482
AT1G25682			Family of unknown function (DU...		Lus10041495 [exp]	39.2	0.8311
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10015503 [exp]	39.4	0.8369

Compare expression of checked genes

Lus10019016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.