Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29380 216 / 2e-67 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 214 / 5e-66 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT1G07430 209 / 1e-63 HAI2 highly ABA-induced PP2C gene 2 (.1) AT4G26080 203 / 2e-61 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G59220 202 / 5e-61 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G57050 191 / 4e-57 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT1G72770 169 / 7e-48 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT5G51760 165 / 5e-47 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT1G17550 164 / 5e-46 HAB2 homology to ABI2 (.1) AT1G67820 134 / 3e-35 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003399 [exp] 325 / 5e-111 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1) Lus10004703 [exp] 214 / 9e-66 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10040738 [exp] 210 / 1e-63 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10040270 [exp] 206 / 8e-63 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10016493 [exp] 205 / 5e-62 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10012962 [exp] 187 / 3e-55 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10026447 [exp] 180 / 1e-51 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 179 / 5e-51 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10034965 [exp] 153 / 6e-43 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002700 [exp] 263 / 3e-85 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.015G018800 [exp] 248 / 1e-79 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.001G092100 [exp] 216 / 7e-67 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.008G059200 [exp] 213 / 1e-65 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 213 / 1e-65 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.001G245200 [exp] 205 / 3e-62 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.009G037300 [exp] 201 / 1e-60 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.006G164632 [exp] 191 / 2e-57 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.006G224600 [exp] 184 / 4e-53 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.018G060300 [exp] 183 / 8e-53 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10019017 pacid=23152714 polypeptide=Lus10019017 locus=Lus10019017.g ID=Lus10019017.BGIv1.0 annot-version=v1.0 ATGAATCAATTCGTGCTGACAAAAACAATAAACGCTCGCCGGAGAAGGTTGAGGATCCGGCGCGTTAAGTACACGTGCGAAACGACGTCGTCCCATCCTA AGACGACGACGACAACACGTGAGATCTCCGTGCTGTTGACGACTGCCGCCGGTGGGTCTGGCAAGTCGAGGAACCGAAACGACGTCGTTTTCTCCAGCTC AGCGGAGGTGAATGACGTGGCGATGACGATGATGAGGAGGAGGATGATATCGTCGTGTGGGTCGGTGTCGGTGATCGGCGGGAGGAAGGAGATGGAGGAT GCGGTGAGCGTGGAGCGAGGGCTGTTACCGTCTGGGGAGTACGATTTCTTCGGGGTATACGACGGTCACGGAGGTGTGCGCGTGGCGGACGCGTGTAGGG AGATGTTGCATAAGGCGGTGGCGGAGGAGATGATGGCGGCGGCGGGAGGAGAGATAGAGTGGGGGGAAGTGATGGAGAGAAGTTTTGGGAAGGTGGATGA GACGGTGGAGGAATACGGGATGACGGTGGAGAGGTGCGTGGTGATGGGCTCTACGGCGGTGGTGGCGGTGGTCGGTAAAGAGGAGGTGGTCGTCGGGAAT TGTGGGGATTCGAGAGCTGTCCTTTGTAGAAAGGGAGTTGCGGTTCCTTTGTCCGTGGATCATAAGCCTGACAGGCCGGACGAGCTGGAAAGAGTTGAAG CCGCCGGCGGGCGTGTCATCAAGTGGAACGGTCCACGTGTCCTCGGCGTTCTCTCCACTTCCAGATCTATAGGTGACCAGTATCTGAAACCATACATAAT ACCGACCCCAGAAGTGGTTGTGCACAAGAGAAGCAAAGAAGACGAATTCCTAATACTAGCCAGCGACGGCCTGTGGGACGTCATCACTAACGAGGTGGCG TGCCAAGTGGCAGCCAAATGCCTGCGTGGCCGAATGAGGCGGCGCGGATCGTCTCCAGAGGTGGTCCGCGCTGCTGAGGCTGCCGCAGTGCTAGCTGAGC TGGCAATGGCTCAGGGCAGCACTGATAACATTAGTGTCATCGTCGTGGAGCTCAACAGTCGTACTAGTACTGCTACTAGTGGTAGTAATATTGGTTCATC AAAGGTTGGCTAG
AA sequence Show only first row Show all	>Lus10019017 pacid=23152714 polypeptide=Lus10019017 locus=Lus10019017.g ID=Lus10019017.BGIv1.0 annot-version=v1.0 MNQFVLTKTINARRRRLRIRRVKYTCETTSSHPKTTTTTREISVLLTTAAGGSGKSRNRNDVVFSSSAEVNDVAMTMMRRRMISSCGSVSVIGGRKEMED AVSVERGLLPSGEYDFFGVYDGHGGVRVADACREMLHKAVAEEMMAAAGGEIEWGEVMERSFGKVDETVEEYGMTVERCVVMGSTAVVAVVGKEEVVVGN CGDSRAVLCRKGVAVPLSVDHKPDRPDELERVEAAGGRVIKWNGPRVLGVLSTSRSIGDQYLKPYIIPTPEVVVHKRSKEDEFLILASDGLWDVITNEVA CQVAAKCLRGRMRRRGSSPEVVRAAEAAAVLAELAMAQGSTDNISVIVVELNSRTSTATSGSNIGSSKVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10019017 [exp]	0	1
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	3.2	0.8811
AT4G29110			unknown protein		Lus10014153 [exp]	4.7	0.8779
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	7.7	0.8604
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10017961 [exp]	8.1	0.8705
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	9.2	0.8402
AT5G61820			unknown protein		Lus10042158 [exp]	17.0	0.8013
AT1G72100			late embryogenesis abundant do...		Lus10041750 [exp]	17.6	0.7623
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	20.6	0.8116
AT1G17160			pfkB-like carbohydrate kinase ...		Lus10026199 [exp]	22.0	0.8274
AT3G09970			Calcineurin-like metallo-phosp...		Lus10014383 [exp]	23.0	0.8291

Compare expression of checked genes

Lus10019017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.