Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 296 / 6e-98 RING/U-box superfamily protein (.1) AT2G46495 200 / 9e-61 RING/U-box superfamily protein (.1) AT2G25410 187 / 7e-56 RING/U-box superfamily protein (.1) AT2G46494 168 / 1e-48 RING/U-box superfamily protein (.1) AT5G36001 139 / 4e-38 RING/U-box superfamily protein (.1.2) AT1G28040 132 / 9e-36 RING/U-box superfamily protein (.1) AT2G25409 112 / 1e-29 unknown protein AT5G07040 108 / 2e-28 RING/U-box superfamily protein (.1) AT2G46493 105 / 1e-26 RING/U-box superfamily protein (.1) AT2G35910 85 / 6e-19 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003401 [exp] 364 / 5e-126 AT5G53110 187 / 5e-57 RING/U-box superfamily protein (.1) Lus10003400 [exp] 262 / 1e-87 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10032382 [exp] 212 / 7e-65 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10012628 [exp] 198 / 1e-59 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10024124 [exp] 108 / 6e-28 AT5G07040 190 / 2e-62 RING/U-box superfamily protein (.1) Lus10005389 [exp] 107 / 6e-28 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10014923 [exp] 87 / 3e-18 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10041134 [exp] 81 / 1e-16 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10036466 [exp] 81 / 2e-16 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017800 [exp] 337 / 5e-114 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.012G011500 [exp] 326 / 2e-109 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 234 / 1e-73 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 231 / 7e-73 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.003G139900 [exp] 199 / 3e-60 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.001G091700 [exp] 188 / 4e-56 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.003G192700 [exp] 113 / 1e-29 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.001G032300 [exp] 108 / 4e-28 AT5G07040 143 / 5e-44 RING/U-box superfamily protein (.1) Potri.015G018200 [exp] 99 / 3e-22 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.007G125600 [exp] 96 / 2e-21 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10019018 pacid=23152665 polypeptide=Lus10019018 locus=Lus10019018.g ID=Lus10019018.BGIv1.0 annot-version=v1.0 ATGATCTTCACTCCCACAACCGCCCAATCATCATCATGCTTCACATCCTCCTGCGGCCAAAACGAGCCCAAAATCCGGTTCCCTTTCCGGATTCAAACCC GCCAGCCGACCCGGTGCAGCTACCCGGGTTTCACCCTCTCCTGTGGTCCCTACAACGAAACGCTCATCTCCTTCCCCGGAACGACGCCGTTTGTCCTCCG AGCCATTGACTATTCAACGCAACAGCTCTGGGTCAACGACCCGGGAAACTGCCTCGCCGCCCGTCTCCTTTCGCACGACCTCTCCGCCGACGTCGGTGGC GAGTCCTCGCCGTTCCGAGGGCTCTACGAGCAGCCTTTTTCAGTTTTCAACTGTTCTGGGAACAACTACTCCCATTTCCGCGGGATGAACCCCATCGCCT GCCTCAGCAGCAGCGGCGGCGGAGGTGGGGGAGAGGGGTTGTCGGCAGTGGGGTACTCGGTGTTTGCGACGTCGTCGGAGAGGGCGATGGCGAGTTTGAG GCGTGAGGCGTCGTGTGAGATGGTGAAGACGGTTATGGTGCCGATGGAATGGCCGTTCTACGAGCAGGTGACGTCGTCCGATCTGAGCGAGGATGTGCGG CTGACATGGGACTTGCCGGAGTGCCGGCGCTGCGAGATGAGGGGCGGAAGGTGTGGGTTGAAGGGGAATTCGTCTCATGATGTCGGCTGTTCTCACATTC CTCCCCGCGGAATGCCAAAAGCTGTTCGCTACGCTATAACAGTAGGCGTGGGAATCCCACTCTTACTATTCGGTCTAGGCGCCTTATGTTGCGTCTTTCG AAGAGTCAAACGATATGCCACCTCATTATCCACCAATGACCACCACCAGTCTCTTCCGCAATTCAATCGTGACGCCATCACCATTCCACCTACTCGTACC GGTCTAGACGGATCGACAATCGAATCGTACCCAAAAATAGTGTTGGGGGAGAGCAGGAGGTTACCGAAGCCGGACGACGACAACACATGTTCCATTTGCT TGTCGGAGTACAACCCTAAAGAAACCGTCAAGACCATACCGGATTGCCATCACTGCTTCCACGCCGAGTGTATCGACGAGTGGCTTCGACTCAACGGGAC CTGCCCCATCTGCCGCAGTTCTCCGCCGCCAGTAGTACTGTTGCCATTGTCATAG
AA sequence Show only first row Show all	>Lus10019018 pacid=23152665 polypeptide=Lus10019018 locus=Lus10019018.g ID=Lus10019018.BGIv1.0 annot-version=v1.0 MIFTPTTAQSSSCFTSSCGQNEPKIRFPFRIQTRQPTRCSYPGFTLSCGPYNETLISFPGTTPFVLRAIDYSTQQLWVNDPGNCLAARLLSHDLSADVGG ESSPFRGLYEQPFSVFNCSGNNYSHFRGMNPIACLSSSGGGGGGEGLSAVGYSVFATSSERAMASLRREASCEMVKTVMVPMEWPFYEQVTSSDLSEDVR LTWDLPECRRCEMRGGRCGLKGNSSHDVGCSHIPPRGMPKAVRYAITVGVGIPLLLFGLGALCCVFRRVKRYATSLSTNDHHQSLPQFNRDAITIPPTRT GLDGSTIESYPKIVLGESRRLPKPDDDNTCSICLSEYNPKETVKTIPDCHHCFHAECIDEWLRLNGTCPICRSSPPPVVLLPLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10019018 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	3.3	0.8886
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	4.0	0.8472
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	5.5	0.8389
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10026125 [exp]	9.1	0.7662
AT5G20480		EFR	EF-TU receptor (.1)		Lus10024681 [exp]	11.2	0.7924
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10022344 [exp]	11.6	0.8169
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	12.8	0.8305
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	14.8	0.8106
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	16.7	0.8216
AT3G47570			Leucine-rich repeat protein ki...		Lus10011387 [exp]	19.0	0.8138

Compare expression of checked genes

Lus10019018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.