Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53460 1169 / 0 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3) AT5G04140 184 / 1e-47 GLS1, GLUS, GLU1, FD-GOGAT FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) AT2G41220 173 / 2e-44 GLU2 glutamate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000390 [exp] 1455 / 0 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10003820 [exp] 178 / 6e-46 AT2G41220 1401 / 0.0 glutamate synthase 2 (.1) Lus10010457 [exp] 178 / 7e-46 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10015217 [exp] 48 / 3e-05 AT4G32360 661 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10031463 [exp] 45 / 0.0003 AT4G32360 659 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017500 [exp] 1263 / 0 AT5G53460 3665 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.012G011700 [exp] 1241 / 0 AT5G53460 3649 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.006G038400 [exp] 177 / 2e-45 AT5G04140 2831 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.016G036900 [exp] 175 / 6e-45 AT5G04140 2813 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.015G017601 [exp] 129 / 8e-36 AT5G53460 119 / 3e-33 NADH-dependent glutamate synthase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] PF01493 [flax] [poplar] GXGXG GXGXG motif
Representative CDS sequence Show only first row Show all	>Lus10019020 pacid=23152698 polypeptide=Lus10019020 locus=Lus10019020.g ID=Lus10019020.BGIv1.0 annot-version=v1.0 ATGCTGGAAGTTGATAAAGAGGTTGTACGAAACAATGAGAAGTTGGAGAACATTGATCTTTCTCTTTTGCTCAGATCTGCTTCTGACATCCGACCTGAGG CTGCACAGTATTGTGTTGAGAAGCAGGATCATGGCTTAGACATGGCGCTGGACAACAAACTTATCACACTCTCAACTGCTGCCATAGAAAAGAGTATTCC TGTATACATAGAGTCTCCTATATGCAATGTGAACCGTGCTGTTGGTACAATGCTTAGTCACGAAGTTACTAAGCGTTACAATTTGGCAGGGCTTCCTAAA GACACAATTCATGTCAAACTCTTTGGAAGTGCTGGGCAAAGTCTTGGTGCTTTCCTATGTCCTGGCATAACCCTGGAGCTTGAGGGTGACAGCAATGATT ACGTTGGTAAAGGATTGTCAGGTGGAAAGATCGTAGTTTATCCACCAAAAGGAAGCCTATTTGATCCAAAAGAAAACATCGTCATTGGTAATGTGGCTCT ATATGGTGCCACCAGTGGTGAAGCCTATTTTAATGGCATGGCAGCAGAAAGGTTTTGTGTGCGTAATTCAGGGGCAACTGCAGTTGTTGAAGGAGTCGGT GATCATGGATGTGAGTACATGACAGGCGGAACAGTAGTTGTGCTTGGGAAGACGGGCAGGAATTTTGCTGCAGGCATGAGCGGTGGTATTGCTTATGTTC TTGACGGTGATGGAAAATTTCATTCTCGTTGCAATCCGGAATTGGTAGATCTTGATAAAGTTGAGGAAGAAGAGGACATCATGCATCTAAGAATGATGAT ACAGCAGCATCAGCGCAATACTAACAGCCAGTTAGCTAAAGAAGTGTTGGCTGATTTTGACAATCTCCTTCCGAAGTTCATCAAGGAGCTCAAGAAGTTA GCAGCTGCATCATTGAATGACAAATCCATTCAGGGGCAAGAAGCTGATGAATCAAAAAGGCCAAGTCGGGTTAGCGATGCTGTTAAGCATCGTGGGTTTA TTGCTTATGAGCGTGAGGGTGTTCACTACAGAGATCCTATTGTCCGCATGAATGACTATAATGAAGTTATGGAGGAGACGAAACCTGGCCCTCTTTTGAA CACCCAGTCAGCTCGCTGCATGGATTGTGGTACTCCTTTCTGCCATCAGGAGCACACTGGTTGTCCTCTTGGAAACAAAATACCTGAGTTCAACGAGCTG GTTTACCAAAATAGATGGCGTGAAGCATTGGACAGGCTGCTTGAGACGAACAACTTCCCGGAATTTACCGGCCGTGTATGCCCTGCTCCCTGTGAAGCTG ATCAGCTAAATAGAATGGGTCATTTGGTGACAGTCTACGAGCGTGCTGATAGAATTGGAGGGCTGATGATGTATGGAGTCCCCAACATGAAGACTGACAA AATGGATGTAGTTCAGCGGCGTGTGAATCTCATGGCAGAGGAAGGCATTGACTTCGTGGTCAATGCTAATGTTGGGGTTGATCCCCAGTATCATCTTGAC CGTCTCCGGGAAAATAATGACGCTGTTATTTTGGCTGTAGGAGCCACCAAACCGAGGGACCTTCCCGTACCTGGACGGGACTTGCAAGGAGTTCATTTTG CCATGGAATTCCTTCACGCAAACACAAAGAGTTTGCTCGATAGCAATCTTGAGGATGGCAACTACATATCAGCTAAAGGGAAAAAAGTGGTCGTCATTGG TGGAGGTGACACCGGTACAGACTGCATAGGAACATCCATCCGCCATGGTTGTACCAGCATTGTAAATCTTGAGCTTCTACCTGAGCCGCCAAGGACTAGA GCACCAGGCAACCCTTGGCCACAGTGGCCTCGCATCTTCCGTATAGATTATGGACACCAAGAAGCTGCAACCAAATTCGGCAAAGACCCGCGATCTTACC AAGTGTTGACCAAACGTTTCGTGGGAGACGAAAGTGGGAAACTCAAGGGGCTCGAGATAGTTCATGTGGAATGGGAGAAGGACGCCAGTGGGAGATTCCA GTTTAAGGAGGTTGAAGGTTCGGAGGAAATCATTGAAGCTGACCTTGTCATGCTAGCAATGGGATTCCTTGGTCCCGAGGCGAACTTGGCTGAAAAGCTG GGCTTGGAGCAAGACGGCCGATCAAACTTCAAAGCAGAATACGGCCGCTTCTCTACCAACGTGGAAGGAGTATTTGCTGCTGGGGATTGTCGTCGAGGTC AGTCGCTTGTCGTGTGGGCAATATCAGAGGGAAGACAAACAGCAGCACAGGTGGACAAGTTCTTGATGGGAGAAGAGGATGCCAGCATCGGTACATTGGA GGATGATGCCGAGAGACAGCCAGACAAGACAAAGAAGCAGCAAGACCACAAGCACCGAGTCATGACATAA
AA sequence Show only first row Show all	>Lus10019020 pacid=23152698 polypeptide=Lus10019020 locus=Lus10019020.g ID=Lus10019020.BGIv1.0 annot-version=v1.0 MLEVDKEVVRNNEKLENIDLSLLLRSASDIRPEAAQYCVEKQDHGLDMALDNKLITLSTAAIEKSIPVYIESPICNVNRAVGTMLSHEVTKRYNLAGLPK DTIHVKLFGSAGQSLGAFLCPGITLELEGDSNDYVGKGLSGGKIVVYPPKGSLFDPKENIVIGNVALYGATSGEAYFNGMAAERFCVRNSGATAVVEGVG DHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDGDGKFHSRCNPELVDLDKVEEEEDIMHLRMMIQQHQRNTNSQLAKEVLADFDNLLPKFIKELKKL AAASLNDKSIQGQEADESKRPSRVSDAVKHRGFIAYEREGVHYRDPIVRMNDYNEVMEETKPGPLLNTQSARCMDCGTPFCHQEHTGCPLGNKIPEFNEL VYQNRWREALDRLLETNNFPEFTGRVCPAPCEADQLNRMGHLVTVYERADRIGGLMMYGVPNMKTDKMDVVQRRVNLMAEEGIDFVVNANVGVDPQYHLD RLRENNDAVILAVGATKPRDLPVPGRDLQGVHFAMEFLHANTKSLLDSNLEDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCTSIVNLELLPEPPRTR APGNPWPQWPRIFRIDYGHQEAATKFGKDPRSYQVLTKRFVGDESGKLKGLEIVHVEWEKDASGRFQFKEVEGSEEIIEADLVMLAMGFLGPEANLAEKL GLEQDGRSNFKAEYGRFSTNVEGVFAAGDCRRGQSLVVWAISEGRQTAAQVDKFLMGEEDASIGTLEDDAERQPDKTKKQQDHKHRVMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019020 [exp]	0	1
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10001648 [exp]	1.4	0.9200
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Lus10020459 [exp]	12.5	0.8633
AT5G39150			RmlC-like cupins superfamily p...		Lus10006543 [exp]	13.9	0.8658
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	15.2	0.8432
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	18.5	0.8806
AT2G27430			ARM repeat superfamily protein...		Lus10001881 [exp]	19.6	0.8661
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	20.6	0.8768
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	22.6	0.8692
AT3G62270			HCO3- transporter family (.1)		Lus10009995 [exp]	23.5	0.8468
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015967 [exp]	24.0	0.8483

Compare expression of checked genes

Lus10019020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.