Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53460 1250 / 0 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3) AT5G04140 605 / 0 GLS1, GLUS, GLU1, FD-GOGAT FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) AT2G41220 595 / 0 GLU2 glutamate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000390 [exp] 1292 / 0 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10010457 [exp] 605 / 0 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10003820 [exp] 597 / 0 AT2G41220 1401 / 0.0 glutamate synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017500 [exp] 1247 / 0 AT5G53460 3665 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.012G011700 [exp] 1239 / 0 AT5G53460 3649 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.006G038400 [exp] 598 / 0 AT5G04140 2831 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.016G036900 [exp] 594 / 0 AT5G04140 2813 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01645 [flax] [poplar] Glu_synthase Conserved region in glutamate synthase CL0036 [flax] [poplar] TIM_barrel PF04898 [flax] [poplar] Glu_syn_central Glutamate synthase central domain CL0052 [flax] [poplar] NTN PF00310 [flax] [poplar] GATase_2 Glutamine amidotransferases class-II
Representative CDS sequence Show only first row Show all	>Lus10019021 pacid=23152692 polypeptide=Lus10019021 locus=Lus10019021.g ID=Lus10019021.BGIv1.0 annot-version=v1.0 ATGGCGGGTACGGGCACTATGAGCAATCTCCTTCAACAGGGAGCTAGCTCCTCTTCGTCGTCTACGCTTCTGAAGAAGCCAAGCAGGTCGTTATGTTCGC CTGTCTTCGCCGTCCAGCCGGTGACCCCTCGCCGCGGCGGGACTCGATGCTCCGTCGCGAAGAATTCGGCAGCTGGTTTAGGCAAGAACTTGTTGCGGCC TCACGGATCCGATAGGAAACTCGTGTGGCAATCTGACGGACCGGGGAGGTCACCGAAGCTACGGATGATGGTCAGGTCCGCATTGTCCGGGGTTCCGGAG AAGCCGCTTGGACTGTACGATCCGTCTTTCGATAAGGACTCTTGTGGGGTGGGATTCGTCGCTGAGCTGTCGGGTGAAAGCAATCGCAAGACGGTAAGCG ATGCATTGGAGATGTTGGTGCGGATGACGCATAGAGGTGCTTGTGGATGTGAAGCGAATACTGGCGATGGAGCTGGGATTCTCGTTGGTCTTCCTCACGC CTTCTACAAAGAGGTTGCAAAGGATACTGGGTTTGAGCTACCTCCACCGGGGGAATATGCAGTTGGCATGTTCTTTTTGCCCACATTGGATAACCGTAGA GAGGAAAGCAAGAATGTGTTTACCAAGGTTGCCGAGTCTCTTGGGCATACAGTTCTTGGATGGCGGTCGGTGCCGACAGATAATTCTGGTTTGGGTCAGT CTGCTGTGCAGACTGAGCCTGTGGTTGAGCAGGTTTTCCTCACACCCACTCCTAGATCGAAAGCTGATTTCGAACAACAGATGTACATCTTACGGAGGGT GTCCATGGTAGCTATCCGAGCTGCTCTAAACCTTCAACATGGTAGCGTCCGGGACTTCTATATATGTTCTCTGTCATCTAGGACTGTTGTTTATAAGGGT CAGCTGAAGCCTGTACAGTGTGTTTATAGTGGTCGGCGGAAGCCTGTACAGTTGAGCGAGTACTACTATGCGGATCTTGGGAATGAAAGGTTTACGAGCT ACATGGCCCTGGTACATTCTCGCTTTTCGACCAATACCTTCCCTAGCTGGGATCGTGCCCAACCTATGCGTGTCTTGGGCCACAATGGTGAAATTAACAC TCTTAGGGGCAATGTGAACTGGATGAGGGCACGCGAAGGTCTTTTGAAATGCAAGGAGCTTGGACTCTCTAAGAATGAGATGAAGAAGCTTTTGCCAATT GTTGATGCTAGTTCATCAGACTCTGGGGCTTTCGATGGTGTCCTTGAACTTCTGGTTCGAGCTGGTAGAAGTCTCCCTGAAGCTGTCATGATGAAAAAAA GTGAAAGCAAGGGGAGATATTTAAGACTGTCCCGGAATCTGCCCGACTTCCTCCAGGGATGGCGGGTGTTGCTCCCCAAATGTGTTATTAATCCTACTTT TTTTGAAGCACAGGCTTCTGATGATGACGAGAACATGGAGAAAATGGGTGTTCACGGCTTGTTGGCTCCATTGAAAGCTTTTGGCTATACTGTTGAAGCC TTGGAAATGCTGCTTCTTCCGATGGCAAAAGATGGCAGCGAGGCTCTTGGCTCAATGGGAAATGATACTCCATTGGCTGTGATGTCTGACAGAGAAAAGC TAACTTTTGAATACTTCAAGCAAATGTTTGCTCAAGTGACAAACCCTCCAATTGACCCCATTAGAGAGAAAATTGTCACTTCAATGGAATGCATGATTGG TCCTGAAGGTGATCTGACAGAAACAACTGAAGATCAATGCCACCGCCTCTCACTGAAAGGTCCTCTCCTGACAATTGATGAAATGCAGGCTCTTAAAAAG ATGGACTACAGGGGTTGGAGGAGCAAAGTTCTTGATATAACTTATTCAAGGGATCGTGGCAGGAAGGGATTAGAGGAAACATTGGATAGGATTTGTGCTG AGGCACATGCTGCTATCAAGGAAGGCTACACCTTGTTGGTTCTTTCTGACAGAGCATTCTCTCCAACAAGAGTTGCTGTAAGCTCACTCTTGGCTGTTGG TGCTGTCCATCATCACCTTGTCAGAAGGCTTGAGCGGACTCAAGTGGGCCTGATAGTGGAGTCTGCTGAACCGCGTGAAGTGCATCATTTTTGTACGTTG GTTGGATTTGGCGCCGATGCTATATGCCCATACTTAGCTGTAGAAGCTATTTGGAGACTGCAGGTTGATGGAAAAATTCCACCAAAATCTAATGGCGAGT TCCGCTCCAAGAATGAGTTGGTGAAAAAGTATTTCAAAGCAAGTAATTATGGTATGATGAAGGTTCTTGCCAAAATGGGGATATCAACGTTGGCGTCATA CAAAGGGGCACAGATTTTCGAAGCCCTTGGCCTTTCATCTGAGGGTGGTGAAATCCACTTGAATGATCCGCTTGCTATTGCAAAGCTTCAAGAAGCTGCG AGATCGAATAGTGTAGCTGCTTATAAAGAGTACTCAAAACGTATCCAGGAATTGAACAAAGCATGTAACTTGAGGGGTATCCTGAAGTTTAAAGACTCTG CCGCTAAGGTTCCGCTGGAAGAAGTAGAGGCAGCTAGTGAAATTGTTAAACGTTTCTGCACTGGAGCTATGAGTTATGGGTCAATTTCATTGGAGGCTCA CACAACACTGGCTCTTGCGATGAATAAGATCGGAGGGAGATCAAACACAGGTGAGGGAGGAGAGCAGCCATCTCGACTGGTGCCTCTTCCAGATGGTTCC AGGAATCCGAAAAGGAGTTCAATTAAGCAGGTTGCAAGTGGGCGGTTTGGCGTTTCAAGTTACTATCTTACAAATGCTGATGAGTTGCAGATAAAGATGG CTCAGGGTGCCAAGCCTGGTGAAGGCGGCGAGCTACCTGGACATAAAGTTATAGGAGACATTGCAGTAACCCGAAATTCCACTGCTGGTGTTGGTCTCAT CAGTCCACCTCCTCATCATGATATCTACTCAATTGAAGACCTTGCCCAACTGATTCACGATCTCAAGAATGCCAATCCAGGAGCCCGGATTAGTGTCAAG TTGGTGTCTGAAGCTGGTGTTGGTGTGATTGCTAGTGGAGTGGTGAAGGGTCATGCTGATCATGTTTTGATCTCTGGTCACGATGGAGGTACTGGAGCTT CTAGATGGACTGGCATCAAGAACGCTGGCCTGCCTTGGGAACTTGGTTTGGCCGAGACCCACCAAACTCTTGTTGCTAACAACCTTCGTGGACGTACCGT TCTTCAGACAGACGGTCAATTGAAAACTGGAAGAGATGTAGCTGTTGCTGCACTTCTTGGTGCAGAAGAGTTTGGCTTCAGCACTGCACCTCTTATAACT CTCGGTTGTATCATGATGAGAAAGTGCCATAAAAATACATGCCCCGTTGGCATTGCTACCCAAGATCCAGTTTTGAGAGAGAAGTTTGCTGGAGAACCTG AACATGTCATCAATTTTTTATTTATGCTAGCTGAAGAACTTAGGGAAATCATGGCTGGCCTTGGTTTCCGTACTGTTAATTACATTGTTTGA
AA sequence Show only first row Show all	>Lus10019021 pacid=23152692 polypeptide=Lus10019021 locus=Lus10019021.g ID=Lus10019021.BGIv1.0 annot-version=v1.0 MAGTGTMSNLLQQGASSSSSSTLLKKPSRSLCSPVFAVQPVTPRRGGTRCSVAKNSAAGLGKNLLRPHGSDRKLVWQSDGPGRSPKLRMMVRSALSGVPE KPLGLYDPSFDKDSCGVGFVAELSGESNRKTVSDALEMLVRMTHRGACGCEANTGDGAGILVGLPHAFYKEVAKDTGFELPPPGEYAVGMFFLPTLDNRR EESKNVFTKVAESLGHTVLGWRSVPTDNSGLGQSAVQTEPVVEQVFLTPTPRSKADFEQQMYILRRVSMVAIRAALNLQHGSVRDFYICSLSSRTVVYKG QLKPVQCVYSGRRKPVQLSEYYYADLGNERFTSYMALVHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMRAREGLLKCKELGLSKNEMKKLLPI VDASSSDSGAFDGVLELLVRAGRSLPEAVMMKKSESKGRYLRLSRNLPDFLQGWRVLLPKCVINPTFFEAQASDDDENMEKMGVHGLLAPLKAFGYTVEA LEMLLLPMAKDGSEALGSMGNDTPLAVMSDREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLTETTEDQCHRLSLKGPLLTIDEMQALKK MDYRGWRSKVLDITYSRDRGRKGLEETLDRICAEAHAAIKEGYTLLVLSDRAFSPTRVAVSSLLAVGAVHHHLVRRLERTQVGLIVESAEPREVHHFCTL VGFGADAICPYLAVEAIWRLQVDGKIPPKSNGEFRSKNELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEGGEIHLNDPLAIAKLQEAA RSNSVAAYKEYSKRIQELNKACNLRGILKFKDSAAKVPLEEVEAASEIVKRFCTGAMSYGSISLEAHTTLALAMNKIGGRSNTGEGGEQPSRLVPLPDGS RNPKRSSIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNANPGARISVK LVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANNLRGRTVLQTDGQLKTGRDVAVAALLGAEEFGFSTAPLIT LGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFLFMLAEELREIMAGLGFRTVNYIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	0	1
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10000390 [exp]	2.4	0.8276
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	4.5	0.8424
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	9.2	0.8146
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018744 [exp]	10.1	0.8396
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10024828 [exp]	12.7	0.8467
AT1G31730			Adaptin family protein (.1)		Lus10037271 [exp]	16.9	0.8310
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032140 [exp]	17.2	0.8193
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038767 [exp]	19.4	0.8113
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	20.2	0.8099
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024136 [exp]	22.3	0.7636

Compare expression of checked genes

Lus10019021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.