Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09380 164 / 1e-48 RNA polymerase III RPC4 (.1) AT4G25180 133 / 2e-36 RNA polymerase III RPC4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000362 [exp] 220 / 1e-70 AT4G25180 69 / 1e-13 RNA polymerase III RPC4 (.1) Lus10009019 [exp] 154 / 1e-44 AT4G25180 174 / 2e-52 RNA polymerase III RPC4 (.1) Lus10009655 [exp] 144 / 3e-40 AT4G25180 169 / 2e-50 RNA polymerase III RPC4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G126700 [exp] 233 / 2e-75 AT5G09380 226 / 2e-73 RNA polymerase III RPC4 (.1) Potri.006G143500 [exp] 229 / 1e-73 AT5G09380 231 / 3e-75 RNA polymerase III RPC4 (.1) Potri.003G107300 [exp] 177 / 2e-53 AT4G25180 192 / 4e-59 RNA polymerase III RPC4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF05132 [flax] [poplar] RNA_pol_Rpc4 RNA polymerase III RPC4
Representative CDS sequence Show only first row Show all	>Lus10019022 pacid=23152716 polypeptide=Lus10019022 locus=Lus10019022.g ID=Lus10019022.BGIv1.0 annot-version=v1.0 ATGGCGTCTAAGGGACCTCCTAAGAAGCGTTCTGCCATCATGATGACTTCTGTACAACAATGTCTTCAGCTTAAGTTCGCGCCAAAAGCTCCTCCTCGCC GGGCACCCAAGCCTGAAGTCAAGGCAGAAAAGACAGAACAGGAGGATGAACGGGCTATGAAGCTGATGCAAGAATTTCAAGAAAGATCACTTAGGAAGAA TAAGATCGAAAAGAAAGGACAAGGTTCACAAATTGCATTTGGAACTGGTGGGTCTTCTACCTTAAGATCTTATGGCATGCCCAGACTTAGGAACATGGAT AGCAATGCAGTTGATGCTGCACCAAGTGTGGCTCGGAAAGAGTACCAGGAACCATGGGATTATTACAGTTATTATCCTGTAACTCTTCCTCTGAGGAGAC CGTATTCGGGAAATCCAGCAACTCTTGACGAGCAGGAATTCGGAGGAGCTGGAGAAGACAATACTTACAATGAAAGCGTACCGAGTGCTGCAGAGGATCT TAATTTATTGGAGCAGGAAGAAAATGCCGAACCGACAATGATGTTTATTCAACTACCCCCTACCATGCCCGTGTTGAAAAAATCGTCTGGCAAAGGCAAC TCAGCTCGATCGCGAAATGCAGGATCCAAGTTAGAGGATTTACCTGCTGGATTCATGGGTAAAATGCTAGTGTACAAAAGTGGTGCAGTTAAGCTGAAGC TTGGTGATACGGTTTACAATGTGAGTTCCTTAGATATGGATATGCAATATTACATTAATGGGCTGTTTATTCATGTTGGAAAAATCAACGTGGCAGGTGT GTGCTGGGATGGAGAGTACATTTGCTCAGGACGTAGTTGCGTTGCTCAGGACGTAGTTGCGTTTAACACTGCCGCAAAGCAGTGTTGTGCTGTTGCAGAG GTTGACAAGCGCGCAATTTTGATCCCCGATATTGAAGCCATCACATCAAACATCGCCGATTTGTGA
AA sequence Show only first row Show all	>Lus10019022 pacid=23152716 polypeptide=Lus10019022 locus=Lus10019022.g ID=Lus10019022.BGIv1.0 annot-version=v1.0 MASKGPPKKRSAIMMTSVQQCLQLKFAPKAPPRRAPKPEVKAEKTEQEDERAMKLMQEFQERSLRKNKIEKKGQGSQIAFGTGGSSTLRSYGMPRLRNMD SNAVDAAPSVARKEYQEPWDYYSYYPVTLPLRRPYSGNPATLDEQEFGGAGEDNTYNESVPSAAEDLNLLEQEENAEPTMMFIQLPPTMPVLKKSSGKGN SARSRNAGSKLEDLPAGFMGKMLVYKSGAVKLKLGDTVYNVSSLDMDMQYYINGLFIHVGKINVAGVCWDGEYICSGRSCVAQDVVAFNTAAKQCCAVAE VDKRAILIPDIEAITSNIADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	0	1
AT3G58180			ARM repeat superfamily protein...		Lus10006688 [exp]	2.6	0.9297
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10002121 [exp]	4.0	0.9124
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	5.3	0.9172
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10006130 [exp]	7.6	0.8877
AT2G16940			Splicing factor, CC1-like (.1....		Lus10034466 [exp]	9.4	0.8998
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	13.6	0.9128
AT1G15860			Domain of unknown function (DU...		Lus10019598 [exp]	13.9	0.8844
AT4G11010		NDPK3	nucleoside diphosphate kinase ...		Lus10032392 [exp]	15.3	0.9017
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	16.0	0.8952
AT1G09800			Pseudouridine synthase family ...		Lus10035791 [exp]	16.1	0.9063

Compare expression of checked genes

Lus10019022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.